Experimental evaluation of SJK SNP calls using two genotyping chips

[i] aHomozygous genotype for reference allele.
[ii] bHomozygous genotype different from reference allele.
[iii] cHeterozygous genotype with one reference allele.
[iv] dSNP genotypes that are not identical between the two chips were removed (1903 out of 300,139 common markers between the two chips).