Table 2.

Composition and Repeat Content of Sequence Surrounding HMG RPCs

Total (bp) % GC % Repeats % LINEs % SINEs % Alu
5′ flank54,7184045161816
3′ flank54,4783739161312
Genomic4145211311

[i] A total of 250 bp of sequence upstream or downstream of RPCs was analyzed for repeats and GC content. Genomic parameters were taken fromLander et al (2001). The % repeats and GC content are from RepeatMasker output.