Comparison of Draft Sequence Assemblies Across D4S394-D4S403 Region
| Assembly | NCBI1 | NCBI2[i] | UCSC1 | UCSC2 | CELERA | HYBRID |
| Version | 9/2/00 | 16/4/01 | 9/1/01 | 5/4/01 | public | NA |
| Length[ii](bp) | 4,220,059 | 7,982,790 | 6,597,859 | 5,725,683 | 3,359,224 | 3,510,128 |
| Contigs | 9 | 10 | 3 | 4 | 81 | 37 |
| Gaps in ctgs | 373 | 466 | 420 | 325 | 197 | 0 |
| Gaps (bp) | 37,300 | 46,600 | 590,800 | 631,400 | 472,294 | 0 |
| Framework[iii]comparison | ||||||
| Duplications[iv] | 3 | 3 | 1 | 3 | 0 | NA |
| Deletions[v] | 5 | 8 | 10 | 10 | 6 | 23 |
| Rearrangements[vi] | 12 | 13 | 11 | 5 | 1 | NA |
| Misassemblies/Mb[vii] | 4.74 | 3.01 | 3.33 | 3.14 | 2.08 | NA |
| NR[viii] coverage | ||||||
| NR fragments | 3961 | 4427 | 4383 | 3516 | 1768 | 2322 |
| NR (bp) | 1,446,441 | 1,597,804 | 1,588,701 | 1,292,726 | 619,743 | 834,492 |
| Coverage[ix] | 0.54 | 0.59 | 0.59 | 0.48 | 0.23 | 0.31 |
| Annotation | ||||||
| Repetitive sequence (bp) | 2,395,019 | 3,438,941 | 2,689,302 | 1,989,867 | 2,418,685 | 1,386,794 |
| PRS447 (bp) | 0 | 0 | 25,707 | 25,707 | 15,679 | 0 |
[i] Modified from original version—see Methods.
[ii] Length: total length of all contigs including gaps within contigs.
[iii] Framework: a set of 107 sequences accurately ordered across the region.
[iv] Duplications: observations of the additional appearance of a marker relative to the framework set.
[v] Deletions: observations of the absence of marker or a series of contiguous markers relative to the framework set.
[vi] Rearrangements: observations of marker orders differing from the framework set that are not the result of duplications or deletions.
[vii] Miassemblies/Mb: total number of duplications, deletions and rearrangements per Mb.
[viii] NR: a nonredundant set of genomic sequence data from the region.
[ix] Coverage: the proportion of sequence from the nonredundant genomic sequence data set (NR) present in assembly.