Overview of the Colinear Regions Detected BetweenArabidopsis and Rice (99% significance level)
| Rice[i] | Arabidopsis [ii] | Anchor points | BAC type[iii] | Clone name | Arabidopsis [iv] ORF | Q[v] | Pchance [vi] (%) |
| 1 | 3 | 11 | O | P0529H11, P0005H10, P0414E03 | At3g54100 | 0.988 | 0.00 |
| 1 | 4 | 10 | O | P0481E12, P0046E05 | At4g18870 | 0.880 | 0.25 |
| 1 | 2 | 10 | O | P0439E11, P0031D02, B1088C09, P0485B12 | At2g30300 | 0.964 | 0.03 |
| 1 | 3 | 8 | O | P0506B12, P0031D11 | At3g55180 | 0.973 | 0.99 |
| 1 | 2 | 7 | O | P0506B12, P0031D11 | At2g39400 | 0.989 | 0.20 |
| 1 | 1 | 6 | O | P0480C01, B1131B07 | At1g34060 | 0.889 | 0.89 |
| 1 | 3 | 5 | O | P0454H12, OJ1529_G03 | At3g08670 | 0.986 | 1.00 |
| 4 | 5 | 5 | I | OSJNBa0038O10 | At5g23280 | 0.984 | 0.45 |
| 4 | 2 | 5 | I | OSJNBa0042L16 | At2g23380 | 0.977 | 0.80 |
| 6 | 3 | 5 | I | P0698A06 | At3g14230 | 0.926 | 0.64 |
| 1 | 2 | 5 | O | P0518C01 | At5g59480 | 0.945 | 0.57 |
| 4 | 5 | 4 | I | OSJNBa0088H09 | At5g06340 | 0.969 | 0.63 |
| 8 | 5 | 4 | I | P0543D10 | At5g43420 | 0.919 | 0.44 |
| 8 | 5 | 4 | I | P0705A05 | At5g43420 | 0.929 | 0.63 |
| 8 | 5 | 4 | I | P0690C12 | At4g08100 | 0.929 | 0.63 |
| 4 | 2 | 4 | I | OSJNBa0084K20 | At2g43230 | 1.000 | 0.44 |
| 10 | 1 | 4 | I | OSJNBa0026O12 | At1g03900 | 0.963 | 0.30 |
| 4 | 3 | 4 | I | OSJNBa0033G16 | At3g11630 | 0.985 | 0.63 |
| 10 | 1 | 4 | I | OSJNBb0044B19 | At1g03900 | 0.987 | 0.25 |
| 4 | 3 | 4 | I | OJ1661_E06 | At3g11630 | 0.985 | 0.63 |
| 6 | 5 | 4 | I | P0468G03 | At5g57140 | 0.999 | 0.89 |
| 4 | 3 | 4 | I | OSJNBa0088H09 | At3g52470 | 0.995 | 0.63 |
| 8 | 4 | 4 | I | OJ1005_B05 | At4g22730 | 0.983 | 0.20 |
| 2 | 1 | 4 | I | OJ1288_G09 | At1g78080 | 0.980 | 0.63 |
[i] Rice chromosome.
[ii] Arabidopsis chromosome.
[iii] O = overlapping BACs, I = individual BAC clone.
[iv] Gene indicating the position of the homologousArabidopsis segment.
[v] Score obtained by quality filtering (see text for details).
[vi] Probability to be generated by chance.