Markup | Genome Research

Table 2.

Nucleotide Bias[i] at the Substitution Site and Immediate Adjacent Sites for Each Chromosome

Chromosome		GC[ii] (%)		−1		0		+1
Chromosome		GC[ii] (%)		A (%)	C (%)	G (%)	T (%)	A (%)	C (%)	G (%)	T (%)	A (%)	C (%)	G (%)	T (%)
1	41.72	1.01	5.37	−1.59	−4.79	−4.61	4.50	4.53	−4.42	−5.03	−1.39	5.48	0.94
2	40.14	2.07	4.55	−1.67	−4.95	−5.39	5.33	5.27	−5.22	−4.55	−1.61	4.65	1.51
3	39.86	2.35	3.90	−1.74	−4.51	−5.50	5.43	5.34	−5.27	−4.26	−1.51	4.09	1.68
4	38.26	2.49	3.91	−1.49	−4.90	−5.94	6.00	5.76	−5.82	−4.33	−1.35	3.86	1.81
5	39.72	0.92	5.02	−1.39	−4.55	−5.47	5.25	5.41	−5.19	−4.58	−1.55	5.29	0.82
6	39.62	1.19	4.88	−1.35	−4.73	−5.43	5.38	5.41	−5.36	−5.20	−0.98	5.22	0.97
7	40.65	1.47	4.99	−1.78	−4.67	−5.38	5.30	4.95	−4.86	−4.55	−1.94	5.26	1.24
8	40.07	2.58	3.40	−1.79	−4.20	−5.37	5.56	5.52	−5.71	−3.91	−1.85	3.40	2.35
9	41.38	2.24	4.48	−2.27	−4.45	−5.11	5.22	4.73	−4.84	−4.16	−1.98	4.54	1.61
10	41.56	1.22	5.51	−1.74	−5.00	−4.75	4.72	4.42	−4.39	−4.86	−1.57	5.66	0.77
11	41.65	0.81	5.62	−2.55	−3.88	−4.45	4.54	4.50	−4.59	−3.68	−2.11	5.44	0.35
12	40.77	1.39	5.37	−1.84	−4.92	−4.94	4.91	4.98	−4.95	−4.68	−1.42	4.89	1.20
13	38.63	1.17	4.71	−1.32	−4.56	−5.64	5.63	5.57	−5.57	−4.78	−1.31	4.87	1.22
14	40.76	1.30	4.46	−1.88	−3.88	−4.77	4.74	4.84	−4.81	−3.38	−2.12	4.67	0.83
15	42.12	1.26	4.94	−1.88	−4.33	−4.82	4.66	4.62	−4.46	−4.25	−1.80	4.88	1.16
16	44.83	0.99	5.34	−1.84	−4.49	−4.09	3.79	3.87	−3.57	−4.61	−1.76	5.40	0.97
17	45.02	0.90	6.37	−2.43	−4.83	−3.61	3.62	3.00	−3.00	−4.59	−2.19	6.59	0.20
18	39.84	1.49	4.78	−2.16	−4.11	−5.20	5.12	5.39	−5.30	−4.06	−1.77	5.44	0.38
19	48.33	−0.42	7.51	−2.54	−4.57	−1.98	1.82	1.99	−1.84	−4.73	−2.63	7.79	−0.45
20	44.11	0.92	6.34	−2.02	−5.25	−3.31	3.54	3.62	−3.85	−4.91	−1.51	5.86	0.54
21	40.89	2.94	3.87	−2.27	−4.55	−5.13	5.04	4.52	−4.44	−4.48	−2.46	4.67	2.27
22	47.64	−0.40	7.74	−2.28	−5.06	−2.48	2.37	2.26	−2.15	−5.18	−2.09	7.87	−0.60
X	39.39	1.33	3.95	−0.88	−4.39	−5.41	5.24	5.83	−5.66	−4.85	−0.91	3.98	1.79
Y	39.11	3.18	3.02	−1.84	−4.37	−5.05	4.90	6.40	−6.25	−3.38	−0.87	3.85	0.40
Genome	40.90	1.43	4.91	−1.70	−4.62	−4.94	4.92	4.91	−4.88	−4.44	−1.59	5.05	0.99

[i] Bias is expressed as a deviation from the chromosome-specific average.

[ii] The average GC content on chromosome.