Table 2.

Overall Statistics of RP Processed Pseudogenes

Ave. relative sequence length[i] Ave. a.a.identity[ii] Ave. nt.identity[iii] Ave.disablements[iv] Ave. 5′ truncation[v] Ave. 3′ truncation[vi]
Processed pseudogenes96.5%76.2%86.8%3.6138
Pseudogenic fragments42.1%74.2%84.1%2.0227127
Total88.5%75.9%84.8%3.44426

[i] Length of translated pseudogenes divided by the length of RP peptides, averaged over the entire pseudogene population.

[ii] Average sequence identity between translated pseudogene and RP peptide sequence.

[iii] Average sequence identity between pseudogene sequence and RP cDNA sequence.

[iv] Average number of premature stop codons, frame shifts, and repeat insertions in the processed pseudogenes.

[v] Average number of missing nucleotides at 5′ end, CDS only.

[vi] Average number of missing nucleotides at 3′ end, CDS only.