Table 2.

Splice Variant Prediction from 10 Normal Rat Tissues

Bladder Eye Heart Kidney Large intestine Small intestine Liver Pancreas Placenta Testis Total
Gene113 85 96123102 69143186141168  268
Probe185129190189134101254433214314 1218

[i] Total RNA of 10 different rat tissues (bladder, eye, heart, kidney, large intestine, small intestine, liver, pancreas, placenta, and testis) were extracted, labeled, and hybridized to the Rat1600 chip using standard and identical procedures. Individual feature hybridization data were collected and normalized as described in Methods. Potential splice variants were predicted by SPLICE and NEIGHBORHOOD algorithm. The number of predictions for each tissue type was calculated separately. The selection ratio (R) was set at 10 and other default cutoff values were applied.