Nonsyntenic Gene Couples Obtained from Non-Ambiguous Matches, Inversions, and Deletion
| Class | Gene couples | Insert name | Remarks | |
| Translocations | SuYBR030w-SuYDR012w | AS0AA001G01/AS0AA027H07 | ectopic recombination between the two copies of RPL2 (Ryu et al. 1998) | |
| SuYOR018w-SuYHR015w | AS0AA018B03 | translocation breakpoint XV-VIII | The two breakpoints | |
| SuYHR013c-SuYOR019w | AS0AA020A08 | translocation breakpoint VIIItXVR | of the same reciprocal translocation | |
| Gene loss in | SuYBR060c-SuYDR037w | AS0AA014G06 | within block of duplication 3 | |
| S. cerevisiae | SuYBR061c-SuYDR037w | AS0AA014G06 | ||
| SuYBR164c-SuYPL108w | AS0AA026G07/AS0AA025H03 | |||
| SuYBR164c-SuYPL109c | AS0AA025H03 | extension of block of duplication 8, SuYBR164c in an | ||
| SuYBR164c-SuYPL110c | AS0AA026G07 | inverted orientation | ||
| SuYKR097w-SuYGL006w | AS0AA019G08/XAS0AA001F03 | outside duplication blocks | ||
| Alternate gene | SuYML051w-SuYJR054w | AS0AA026H05 | ||
| loss | SuYML051w-SuYJR057w | AS0AA025G05 | not referenced as a non-syntenic pair in (Bon et al. 2000) | |
| SuYBR008c-SuYOR363c | AS0AA003E06/AS0AA002A06 | SuYBR008c in an inverted orientation | ||
| SuYIL089w-SuYAR019c | AS0AA022G08 | |||
| Inversions | SuYOR182c-SuYOR184w | AS0AA001E05 | SuYOR182cinverted | |
| SuYJL157c-SuYJL158c | AS0AA004E05 | SuYJL158cinverted | ||
| Composite | SuYER157w-SuYMR090w | AS0AA027E03 | non-subtelomeric | |
| rearrangements | SuYMR091c-SuYLR039c | AS0AA012C05/AS0AA019G01 | ||
| SuYLL055w-SuYEL071w | AS0AA007E08 | subtelomeric | ||
| SuYLL057c-SuYMR053c | AS0AA009G06/AS0AA012D10/AS0AA025G10 | |||
| SuYJL217w-SuYPL273w | AS0AA017E08 | subtelomeric | ||
| SuYJL217w-SuYFL053w | AS0AA005D11 | |||