Table 2.

Top Accuracy Genes Selected by LDA and Class Prediction Method for Classifying BRCA2 Mutation Positive Tissue Samples

Colon Description Accuracy
LDA
175123mitogen-activated protein kinase 71.000000
714106plasminogen activator, urokinase0.954545
210887suppression of tumorigenicity 13 (colon carcinoma)0.954545
29054ARP1 (actin-related protein 1, yeast) homolog A0.954545
36775hydroxyacyl-Coenzyme A dehydrogenase0.954545
21652catenin (cadherin-associated protein), alpha 1 (102kD)0.909091
233721insulin-like growth factor binding protein 2 (36kD)0.909091
666377zinc finger protein 1610.909091
50413armadillo repeat gene deletes in velocardiofacial syndrome0.909091
179804PWP2 (periodic tryptophan protein, yeast) homolog0.909091
563444forkhead (Drosophila)-like 50.909091
345423DKFZP564M112 protein0.909091
246194ESTs0.909091
23014mitogen-activated protein kinase 10.909091
51209protein phosphatase 1, catalytic subunit, beta isoform0.909091
341130retinoblastoma-like 2 (p130)0.909091
345645plate-derived growth factor beta polypeptide0.909091
Class Prediction Method (Hedenfalk et al. 2001)
36775hydroxyacyl-Coenzyme A dehydrogenase0.954545
29054ARP1 (actin-related protein 1, yeast) homolog A (centractin alpha)0.954545
666377Zinc finger protein 1610.909091
50413armadillo repeat gene deletes in velocardiofacial syndrome0.909091
31842UDP-galactose transporter related0.863636
51209protein phosphatase 1, catalytic subunit, beta isoform0.909091
345645plate-derived growth factor beta polypeptide0.909091
340644integrin, beta 80.863636
344109proliferating cell nuclear antigen0.863636
784830D123 gene product0.772727
366824cyclin-dependent kinase 40.727273