Table 2.

Distribution of SAGE Tags Matching Genes or ESTs, Sorted by Abundance Class

Copies per cell[ii] [iii] Percent abundance[ii] Range of tag frequency Matching[iv] gene EST No match Total
>100>0.27   >382181221
50–1000.132–0.27183–3635113771
5–500.0135–0.13219–180440199162801
1–50.0025–0.01354–181,2802,0771,5704,927
0.3–10.0015–0.00222–37762,1953,4636,434
<0.3<0.00075 1  7753,56319,70824,046
All transcripts3,7118,29624,29336,300
(10.2%)(22.9%)(66.9%)

[i] This table represents information calculated from the sum of both SAGE libraries (136,856 total tags representing 36,300 unique transcripts.)

[ii] Unless otherwise noted, ranges are given as > the first value and ≤ the second value.

[iii] Copies per cell was calculated assuming, or average, 500,000 transcripts in a cell (Hastie and Bishop 1976).

[iv] If a tag matches a gene and an EST, it was counted only as a gene. See Methods for tag-to-UniGene cluster matching algorithm.