Distribution of Retroelements in the Maize Genome
| Element[i] | % of sequences in cne1g library | % of BACs positive for element[ii] |
| Huck G-5n6 (LTR) | 10.7 | 80.5 |
| Grande G-6k8 (pol) | 3.9 | 64.5 |
| Ji G-6d24 (pol) | 9.4 | 65.9[iii] |
| Prem-2 G-6d24 (pol) | 1.6 | 65.9[iii] |
| Prem-1 G-1f15 (LTR) | 2.5 | 60.5 |
| Opie G-2a19 (pol) | 7.1 | 64.6 |
| Zeon-1 G-6o11 (LTR/gag) | 4.8 | 46.2 |
| Hopscotch | 0 | n.d. |
| Magellan | 0 | n.d. |
| Cinful G-2f14 (pol) | 3.5 | 26.0 |
| Milt | 0.7 | n.d. |
| Cin1 | 0.5 | n.d. |
| Reina | 0 | n.d. |
| Tekay G-3p17 (LTR) | 1.2 | 10.8 |
| Fourf | 0.4 | n.d. |
| Kake | 0.2 | n.d. |
| Victim | 0.2 | n.d. |
| ‘ANLI’ G-5n7 (pol) | 3.1 | 36.4 |
| Copia G-6l19 (pol/LTR) | 0.3 | 5.6 |
| Copia G-1e23 (pol) | 0.05 | 0.2 |
| Copia G-5e19 (pol) | 0.05 | 0.4 |
| Copia G-10d11 (pol) | 0.05 | 1.5 |
| Gypsy G-6d16 (pol) | 0.09 | 5.8 |
| Copia G-3n4 (pol) | 0.5 | 4.8 |
[i] Letters in parentheses indicate region of element used as probe. LTR, long terminal repeat; pol, polyprotein;gag, gag polyprotein.
[ii] All calculations are corrected for the estimated 12% of BAC clones that contain no insert of maize genomic DNA. n.d., Not determined.
[iii] The Prem-2 and Ji families cross-hybridize.