Forkhead Transcription Factor DNA-Binding Motifs
| Protein | Organism | Consensus sequence | ||||||||||||||||
| Freac-2 | Human | N | N | A | N | N | G | T | A | A | A | C | A | A | N | N | N | |
| Freac-3 | Human | N | N | N | N | N | G | T | A | A | A | T | A | A | A | C | A | |
| Freac-4 | Human | C | Y | W | A | W | G | T | A | A | A | C | A | N | W | G | N | |
| Freac-6 | Human | T | A | A | A | Y | A | A | A | Y | A | N | N | M | ||||
| Freac-7 | Human | W | N | N | A | N | A | T | A | A | A | Y | A | N | N | N | N | |
| HFH-8 | Mouse | Y | R | N | A | T | A | A | A | C | A | N | N | N | ||||
| HFH-1 | Rat | A | W | A | T | A | A | A | C | A | W | T | N | |||||
| HFH-2 | Rat | A | A | A | Y | A | A | A | C | A | W | T | N | |||||
| HNF-3β | Rat | W | A | A | R | Y | A | A | A | Y | A | N | T | N | C | M | ||
| XFD-1 | Xenopus laevis | Y | A | W | G | T | A | A | A | Y | A | W | W | R | Y | |||
| XFD-2 | X. lae. | W | N | W | A | T | A | A | A | C | A | W | N | N | R | |||
| XFD-3 | X. lae. | W | N | W | G | T | M | A | A | C | A | W | W | M | W | |||
| Croc | Drosophila melanogaster | W | A | N | A | R | T | A | A | A | T | A | T | N | N | N | N | |
| HCM1p[ii] | Yeast | W | A | A | Y | A | A | A | C | A | A | W | ||||||
| ECB-SFF[iii] | Yeast | A | A | W | W | N | R | T | A | A | A | Y | A | A | A | |||
| SFF-LIKE[iv] | Yeast | W | A | W | W | N | R | T | A | A | A | C | A | A | N | |||
| M14b[v] | Yeast | W | N | W | A | A | A | H | A | A | A | C | A | M | W | |||
[i] Note. Weight matrix consensus sequences (IUPAC codes) taken from Transfac (Wingender et al. 2000) unless noted otherwise. References for the motifs taken from Transfac are given in the text.
[ii] Zhu and Davis (1998).
[iii] Spellman et al. (1998).
[iv] This work.