Table 2.

MITEs Identified in the STC Database by FASTA Searches[i]

MITE Query sequences (nucleotides) STCs
Amy/LTP O. sativa Ramy2A (M74177), 1613-1991
[ii] 67
Castaway O. sativa salt tolerance protein salT (Z25811), 332–695
OSJNBa0039G21f, 185-560157
Crackle O. longistaminata Xa21 member F (U72729), 6202–6585
OSJNBa0084B03f, 354-73628
Ditto O. sativa 16.9 kDa heat shock protein (M80938), 635–878
OSJNBa0017O06f, 311-557228
Explorer O. sativa thioredoxin h (D26547), 514–689
OSJNBa0045D17r, 221-382181
Gaijin O. sativa aspartic protease (D32165), 302–448
OSJNBa0001F16r, 523-667315
Krispie O. longistaminata Xa21 member D (U72726), 10020–10975
[ii] 0
Pop O. longistaminata Xq21 member C (U72723), 11899–12023
OSJNBa0040H11f, 514-64911
p-SINE1 O. glaberrima p-SINE1-r1 (D10677), 1–881
[ii] 17
Snabo-1 O. sativa Sh2/A1-homologous regions (AF101045), 15692–16146
OSJNBa0021G09r, 69–51931
Snabo-2 O. sativaSh2/A1-homologous regions (AF101045), 22996–23349
OSJNBa0032H07r, 350–58189
Snabo-4 O. sativaSh2/A1-homologous regions (AF101045), 26699–26918
OSJNBa0012F13r, 113–323202
Snap O. longistaminata Xa21 member A1 (U72725), 7432–7614
OSJNBa0014O10f, 400-58619
Stowaway O. sativa putative transcription factor X1 (AF101045), 7044–7187
OSJNBa0074P07r, 486-628166
Tourist O. longistaminata Xa21 member F (U72728), 1077–1239
OSJNBa0027M15f, nt 196-353391
Truncator O. longistaminata Xa21 member E (U72724), 5211–8128
[ii] 491
Wanderer O. sativa prepro-glutelin (D00584), 1146–1366
OSJNBa0041D03f, 631-841353

[i] Lowest-scoring STC homologue with a full-length alignment was used as a query in a second FASTA search of the STC database, and total unique homologues (E < 10−4) from both searches were recorded.

[ii] No full-length alignments with Amy/LTP, Krispie, p-SINE1, or Truncator were observed.