Markup | Genome Research

Table 1.

Average Number of Chromosome Breaks Between Consecutive Markers and the Average of the Logarithm of Two-Point Likelihood for the Maps with Breakage Probabilities Computed as in Extended TSP + MLE

Chr		OCB/no. of markers		Log [L(M)]/no. of markers
Chr		Whitehead	RHMAPPER	CONCORDE	Whitehead	RHMAPPER	CONCORDE
1	3.70	?	1.66	−5.74	?	−2.28
2	4.18	3.80	2.12	−6.37	−5.47	−3.02
3	3.92	2.71	1.97	−6.17	−4.22	−2.82
4	3.84	3.75	2.15	−5.97	−5.37	−3.01
5	3.66	3.37	1.99	−5.72	−4.98	−2.73
6	3.59	2.60	1.70	−5.73	−4.07	−2.44
7	4.00	2.86	1.92	−6.20	−4.41	−2.79
8	3.64	3.64	2.09	−5.88	−5.39	−2.97
9	3.56	2.86	1.85	−5.59	−4.28	−2.55
10	3.76	3.55	2.04	−5.95	−5.24	−2.91
11	3.35	2.53	1.86	−5.26	−3.87	−2.42
12	3.67	3.87	1.98	−5.86	−5.66	−2.81
13	3.58	2.92	2.01	−5.72	−4.50	−2.89
14	3.43	2.43	1.79	−5.52	−3.78	−2.53
15	4.28	4.16	2.25	−6.64	−5.99	−3.19
16	4.43	3.18	2.32	−6.70	−4.87	−3.30
17	4.27	2.74	2.03	−6.71	−4.29	−2.83
18	4.22	3.07	2.47	−6.48	−4.76	−3.63
19	4.40	2.78	1.99	−6.74	−4.26	−2.67
20	3.76	2.41	1.74	−6.10	−3.83	−2.45
21	3.99	2.64	2.19	−6.65	−4.40	−3.35
22	4.12	2.87	2.17	−6.62	−4.53	−3.09
X	3.37	2.36	1.70	−5.22	−3.61	−2.32

[i] (Chr) Chromosome number; (Whitehead) Whitehead Institute map (Hudson et al., 1995); (RHMAPPER) maps computed by us using RHMAPPER for GB4 panel data; (CONCORDE) maps computed using CONCORDE for GB4 panel data.