New Atypical Gene Predictions for the 10 Genomes Made by the GeneMark.hmm program
| Species name | Total | No. of GeneMark.hmm new predictions characterized as atypical [corroborated by gapped BLASP search ( P < 1e − 5)] |
| A. fulgidus | 111 | 25 |
| B. subtilis | 86 | 14 |
| E. coli | 135 | 22 |
| H.influenzae | 44 | 24 |
| H. pylori | 16 | 5 |
| M. genitalium | 37 | 25 |
| M. jannaschii | 80 | 26 |
| M. pneumoniae | 20 | 14 |
| M. thermoautotrophicum | 39 | 4 |
| Synechocystis | 115 | 17 |
[i] The GeneMark.hmm program (Lukashin and Borodovsky 1998) shows typical and atypical models in parallel.
[ii] Numbers of new predictions, as compared with the GenBank records, are shown along with the numbers of cases when the gene prediction was corroborated by similarity search by gapped BLASTP (Altschul et. al. 1997).