Table 1.

Skeletal Muscle SAGE Tags Detected 100 or More Times in a Sample of 53,875 Total Tags

Tag (CATG + . . .) Gene product GenBank accession no. Times detected
CCCATCGTCC cytochrome c oxidase 2 [ii] 7627–40[ii] 1780
AAGATCAAGAα actin[iii] J00068 1001
ATCCCCGCCCcreatine kinase M M14780 851
TTCATACACC NADH dehydrogenase 4/4L 11491-504 847
CTGGAGCCTGtype 1 (slow, cardiac β) myosin heavy chain X05631 830
CCCACCACCCβ-tropomyosin X06825 703
AGCCCTACAA NADH dehydrogenase 3 9709–22 702
TACCATCAATglyceraldehyde-3-phosphate dehydrogenase M36164 593
GCGACCGTCAfructose 1,6-diphosphate aldolase a M21190 582
GTTTGGATCTmyoglobin X00373 581
ACCCTTGGCC NADH dehydrogenase 1 3263–76 565
GAATGACTGAmyosin heavy chain 2a Z32858 563
TCCTCAACCCslow twitch troponin C M37984 499
TGATTTCACT cytochrome c oxidase 3 8726–39 489
ACTAACACCC NADH dehydrogenase 2 4606–19 478
CTAAGACTTC 16 S rRNA 2276–89 442
TGGGCGGCCTmyosin light chain 2 M21812 409
CCCCGGCCACdesmin U59167 400
GAGGGCCGGAfast troponin I L21715 400
ATGGTGCGCCfast skeletal troponin C X07898 397
AGGCACCTGGEST similar to slow twitch skeletal muscle troponin I N87243 F17753 393
TTCCAATAAAcardiac myosin light chain 2 X66141 388
GGGGAGGAACslow troponin T M19309 364
AAAACATTCT truncated 16 S rRNA 1738–51 325
AGGATCGAGGβ enolase X51957 324
CACCTAATTG ATPase 6/8 8460–73 304
GGAGCCAACTEST from muscle, similar to troponin T AA192217 287
CAGAGGGTGGglycogen phosphorylase X03031 285
TAGGTTGTCTtranslationally controlled tumor protein L13806 277
AATCAACAAAmyosin light chain 3f X05451 [iv] 257
CAAGCATCCC truncated 12 S rRNA 118–31 248
CACTACTCAC cytochrome b 14326–39 238
CAAGTATAAAtitin X69490 208
CCTCAGGATA NADH dehydrogenase 5 13853–66 186
GAGGCTGTGGphosphoglycerate mutase muscle specific subunit M18172 186
ATTTGAGAAG cytochrome c oxidase 1 6737–50 177
GGGCTGGGGTribosomal protein L29 U10248 175
GCTTTGCCTCcytochrome c oxidase 6a M83308 169
TCGAAGCCCC NADH dehydrogense 4L 10841–54 169
AAGACAGTGGribosomal protein L37a X66699 163
TGGGCAAAGCelongation factor 1γ Z11531 163
AAAGTCATTGα-tropomyosin M19713 146
TGCCAGAAAAtelethonin AJ000491 142
AGCACCTCCAelongation factor 2 Z11692 131
TTGGTCCTCTribosomal protein L41 AF026844 131
TAATGACAATskeletal muscle LIM-protein FHL1 U60115 128
TGAATAAAGTsarcolipin U96093 124
TTCAATAAAAacidic ribosomal phosphoprotein P1 M17886 117
TTTACTCAGCskeletal muscle C-protein (slow myosin binding protein C) X66276 111
X73114
CTCATAGCAGEST similar to translationally controlled tumor protein AA716547 110
TTGGAGATCTNADH dehydrogenase MLRQ subunit U94586 110
GTTTCAGGTACa2+ ATPase (HK2) M23115 107
AGGGCTTCCAWilm’s tumor-related protein QMM642421103
TCTGCACCTCS1 (elongation factor-1 α2) X70940 100

[i] Complete lists of all tags, in both alphabetical order and order of abundance, are available via the internet athttp://www.gcrc.rochester.edu/SWindex.html.

[ii] Italics denotes tags matching the mitochondrial genome (HSMITG, GenBank accession no. X93334), and values listed under accession number for these tags indicate the locus within the mitochondrial genome.

[iii] Also matches other actin isoforms, but α-actin is much more abundant in skeletal muscle.

[iv] Results from present study, Lanfranchi et al. (1996), andWade et al. (1989) have A in eighth position; X05451 has G in eighth position.