Table 1.

Primer Design

SNP name Type Allele-specific primers Label[i] Reverse primers Melting temperature dbSNP ID (ss#)
216 S2G/C ACCAGGCCAGGCCGGCC Tam TGGCCCTGTGCAGGCTGAAA 68SS5112738
TGCTGCCTCTGCTCCCAGGC Fam GGGAACCGCAGGAGTAGGCTCA
216 M+1G/T AAGGTTCAGGGTGAGGGTTTCGT Tam NA (Linear Assay) SS5112737
AAGGTTCAGGGTGAGGGTTTCGC Fam
216 ST+4T/G CAGCATTTGGGAACTTCAAGT Fam CAAATCACCTCTGTCACCCC 59SS5112741
GTCCACTCTCCTGCTTCTCC Rox CCACCCAGGTCACAGAGAAC
216 ST+7T/C TTTGACTGTCCCCATCCCATCT Fam GTCTGTGGGCAGAGGAGCAA 64SS5112744
TGACTGTCCCCATCCCATCC Rox
216 V-2A/G ACTGAGTGAGGATGGGCTCT Tam TGCAGTTCAAGTTCCTGGAG 59SS5112757
CTGAGTGAGGATGGGCTCC Fam
216 S+1T/A GTGGCCTCCCAGTCAAGCGT Tam GTCAAGGGTGAGGCAGCCAG 60SS5112740
TGGGGCAGGGATCCACCCCCT Fam CGAGCGCCTGCTTCCTGAGCC

[i] (Tam) TAMRA; (Fam) 6FAM.