List of Plasmids
| Plasmid | Pertinent features | Source/Reference |
| pBeloBAC11 | F plasmid-based very low-copy vector | Kim et al. (1996) |
| pBeloBAC11/SceI | pBeloBAC11 with the I–SceI recognition site inserted at the HpaI site | F. Blattner's lab |
| TrueBlue-BAC2 | Accurate color selection vector | Genomics One |
| pBAC/oriV | pBeloBAC11 with oriVinserted at the XhoI site | Fig. 1 and Fig.3 |
| pCG273 | pBAC/oriV containing 140-kb insert of wheat DNA | C. Gaskins |
| pCG274 | pBAC/oriV containing 122-kb insert of wheat DNA | C. Gaskins |
| pCG275 | pBAc/oriV containing 108-kb insert of wheat DNA | C. Gaskins |
| pMPM123 | ColE1 ori, araC-P BAD, SpR, ApR | Mayer (1995) |
| p67 | pBAC/oriV containing 40-kb insert of trout DNA | C. Small and B. Bogden |
| p69 | pBAc/oriV containing 80-kb insert of trout DNA | C. Small and B. Bogden |
| pJW22 | pBR322 with itsori flanked by two NotI sites (formerly pANTS) | M. Koob, unpubl. (see Hasan et al. 1994) |
| pJW344 | pJW22 containingaraC-P BAD | This paper |
| pJW349 | pJW344 containing araC-P BAD-trfA203 cassette | Fig. 2 |
| pJW360 | pBAC/oriV | Fig.1 |
| pJW378 | pBAC/oriV containing 20 kb of Arabidopsis thaliana DNA inserted between two NotI sites | Fig.4A; Fig. 5 |
| pJW406 | pTrueBlue-BAC2/oriV | Fig. 1, legend |
| pJW408 | pBeloBAC11/SceI/oriV | Fig. 1, legend |
| pJW419 | pTrueBlue-BAC2/oriV/SceI | Fig. 1, legend |
| pJW424 | pJW344 containingaraCP BAD trfA254 cassette | Fig.6 |
| pJW457 | pJW344 containingaraCP BAD trfA250 cassette | Fig.6 |
| pJW458 | pJW344 containingaraCP BAD trfA173 cassette | Fig.6 |
| pJW459 | pJW344 containingaraCP BAD trfA171 cassette | Fig.6 |
| pJW487 | pBAC containing 100 kb of Arabidopsis thalianaDNA inserted between two NotI sites and retrofitted withoriV | This paper |
| pJW511 | pBAC containing 77 kb of rice DNA retrofitted with oriV | This paper |
| pJW547 | pIndigoBAC-5; phosphorylated and recircularized from the linear epicenter pIndigoBAC-5 (HindIII) | This paper; Methods |
| pJW550 | pIndigoBAC/oriV | Fig. 1, legend |