Table 1.

Insertion-deletion (indel) polymorphism summary

L(intron) dL f(minor) GC(gene) GC(intron) Primates intron sequence
7310.0330.3870.16495–99% gtaatttaaaacttaaaattatttatttgattgtatttttattcatgtgctt aaagaattttTcttttttgtag
8010.0540.5950.787N/A gtgagtcccagggtggggctggggaccgtgggacGggggggggtcccagccc tgccctcacgcccaccccaccgcccccag
8110.0340.5950.778N/A gtggggcggggcccaggcggggaGgggggcccacgcagcggagcagccccaa catcccgcggccatctcccacccccaacag
9010.0220.5950.700N/A gtgagtgggcaggacaggggcctggggtaggggacagcaagtgaCccccccc tccacagcccagtctgacccaccccttccgtggccgcag
101−30.0110.3610.31788–100% gtaagaaagcaggtgtctgcaaaaagtcatgtatcgatttattgtttgtaat gatacAGTagtatagcagataactaagacatattttcttgaatttgcag
120−30.0210.5160.292100% gtattttgtcactcttgaaagtttttattgggtaagaggttcatgccctttg
−40.010  tcctcattttTTCttcttgttattttatcTTTAtttaCTTTTtccacttca
−50.010  tgTtttttttcctttag
−10.010
125−10.0210.4110.37692–98% gtaaatgTtctcctctttgttcaactcttaagtttcacatccagaagtttcat acactgacaagttgtggctttgatctggtttttgcgtaaccttaaatatga ctttttttttccccaccccag
79−20.3540.3740.234100% gtagtaaattacttaaattcaatttttccttgaaatAAgtgtgattagtaac ccattattatttcctttttattttcag
81−10.3750.5160.370100% gtaggaagagtgggagttttgcaaatggacaacTtaaagatggggaagaga atcaaactacacttttttccttttttctag

[i] From left to right, we list the intron size, the size change with respect to the major allele, the minor allele frequency, the gene level GC content, the intron level GC content, the degree of conservation relative to their primate orthologs, and lastly, the intron sequence itself with the indel in uppercase. A total of 42 polymorphic sites were identified. There were 30 single-base substitutions and 12 indels, at normalized rates of θ(subst) = 6.75 × 10−4 and θ(indel) = 2.70 × 10−4.