Table 1.

List of Genes Identified by Angle Selection

Gene ID Ratio of means Loading Gene description
Liver-specific signature PC1
M36803 213.50.3293hemopexin
J02843 337.80.3284cytochrome P450IIE1 (ethanol-inducible)
X53595 344.50.318β-2-glycoprotein I (apolipoprotein H)
HG2841-HT2970197.30.3175albumin 5
HG2841-HT2969161.50.3042albumin, 3
M13149 131.50.2592histidine-rich glycoprotein
M10050 291.60.2533liver fatty acid binding protein (FABP)
X03168 2313.70.2242S-prot
D14446 148.20.2113HFREP-1
M16961 161.20.2067α-2 HS-glycoprotein α and β chain
X51441 342.20.1958serum amyloid A (SAA) protein clone pAS3-α
HG1827-HT1856284.20.1956cytochrome P450, subfamily Iic
L00190 254.40.1614D29832, M21642 and others
M58600 1225.60.1523heparin cofactor II (HCF2)
M21642 183.90.1265(dysfunctional) antithrombin III (ATIII) Utah
M19828 1577.60.1064apolipoprotein B-100 (apoB)
M11567 3034.80.1059angiogenin and three Alu repetitive sequences
X14690 222.40.1045plasma inter-α-trypsin inhibitor heavy chain H(3)
M21642 128.90.096(dysfunctional) antithrombin III (ATIII) Utah
M20786 248.80.0929α-2-plasmin inhibitor
M11321 317.20.0881group-specific component vitamin D-binding protein
U08006 146.80.0855complement 8 α subunit (C8A)
J03474 132.60.0778transcription factor SP1
S48983 358.80.0771SAA4 (serum amyloid A)
Muscle-specific signature PC1
X00371 5450.3348myoglobin
M33772 1527.70.3083fast skeletal muscle troponin C
Z20656 2992.50.287cardiac α-myosin heavy chain
M21494 410.40.2863muscle creatine kinase (CKMM)
U96094 363.60.279sarcolipin (SLN)
J04760 701.80.2658slow-twitch skeletal troponin I (TNN1)
M83308 5723.70.2651mitochondrial cytochrome-c oxidase subunit VIa (COX6A)
X06825 452.30.2444skeletal β-tropomyosin
L21715 851.70.2257troponin I fast-twitch isom
M21665 488.50.2184β-myosin heavy chain
M19309 1149.90.2099slow skeletal muscle troponin T, clone H22h
X90568 3169.90.2077titin protein (clone hh1-hh4)
S73840 350.50.2022type Hx myosin heavy chain
M20543 993.20.1917skeletal α-actin
X16504 1016.30.168X51957 and others
M20642 747.20.15alkali myosin light chain 1
U35637 386.90.1345nebulin/U35637
M29458 564.40.1056carbonic anhydrase III
M86407 759.10.0813α actinin 3 (ACTN3)
Brain-specific signature PC2
S72043 90.43060.4026GIF (growth inhibitory factor)
M13577 686.29630.3566myelin basic protein (MBP)
S40719 20.55660.2755glial fibrillary acidic protein
HG1877-HT191782.21330.1778myelin basic protein
X99076 49.59850.1633NRGN
U48437 23.30060.1404amyloid precursor-like protein 1
J04615 5.99260.1292lupus autoantigen (small nuclear ribonuclepoprotein snRNP SM-D)
D21267 184.8490.1252highly expressed protein
L07807 30.23110.1162dynamin
HG3437-HT362827.45260.1159myelin proteolipid protein
L10373 18.25440.1123(clone CCG-B7) sequence
M16364 9.33010.1071creatine kinase-B
M98539 3.71090.0912prostaglandin D2 synthase
U44839 3.14690.089putative ubiquitin C-terminal hydrolase (UHX1)
D63851 10.90020.0863unc-18 homolog
Y09836 16.170.0838unknown protein
M37457 9.07570.0805Na+, K+, ATPase catalytic subunit alpha-III isoform
M25667 27.350.0779neuronal growth protein 43 (GAP-43)
D78577 6.36760.0779DNA for 14-3-3 protein eta chain
L20814 68.14130.0735glutamate receptor 2 (HBGR2)
J04046 6.49090.0729calmodulin
X04741 137.53510.0719protein product (PGP) 95
L37033 6.00280.071FK-506 binding protein homolog (FKBP38)
M11749 11.57850.0669Thy-1 glycoprot
D82343 140.36440.0649AMY
S82024 47.62370.06SCG10 (neuron-specific growth-associated protein/stathmin homolog)
D49958 29.57550.0571membrane glycoprotein M6
M65066 15.02920.0541cAMP-dependent protein kinase regulatory subunit RI-β
D87465 9.71490.0532KIAA0275
X86809 4.32150.0524major astrocytic phosphoprotein PEA-15

[i] The genes are sorted by their loadings on the projection space (PC), which separates the specific tissue. Also provided is the ratio of the mean of the gene expression in the specific tissue sample to the mean of the gene expression in all the other tissues. Genes with large values of the ratio tend to have large PC loadings. In the case of the brain-specific signature, only the top 30 genes as ranked by their loads on PC 2 are provided. A complete list of genes is in Supplementary Materials.