Table 1.

Sequences and Locations of Oligonucleotide Probes for HLA-B Exons 2 and 3

Probe Nucleotide position Sequence
A. HLA-B Exon 2
A101–20 5′GCTCCCACT T CATGAGGTAT3′
A201–20 5′GCTCCCACT C CATGAGGTAT3′
B101–20 5′TTC T ACACC T C CG TGTCCCG3′
B221–40 5′TTC T ACACC G C CA TGTCCCG3′
B321–40 5′TTC G ACACC G C CA TGTCCCG3′
B421–40 5′TTC C ACACC T C CG TGTCCCG3′
B521–40 5′TTC C ACACC G C CA TGTCCCG3′
B621–40 5′TTC T ACACC G C TA TGTCCCG3′
B721–40 5′TTC T ACACC G C CG TGTCCCG3′
C141–60 5′GCC C G T CCGCGGGGAGCCCC3′
C241–60 5′GCC T G G CCGCGGGGAGCCCC3′
C341–60 5′GCC C G G CCGCGGGGAGCCCC3′
D161–80 5′GCTTCAT CT C A GTGGGCTAC3′
D261–80 5′GCTTCAT CA C C GTGGGCTAC3′
D361–80 5′GCTTCAT TG C A GTGGGCTAC3′
D461–80 5′GCTTCAT CG C A GTGGGCTAC3′
E181–100 5′GTGGACG A CAC C C A GTTCGT3′
E281–100 5′GTGGACG G CAC C C A GTTCGT3′
E381–100 5′GTGGACG A CAC G C T GTTCGT3′
E481–100 5′GTGGACG A CAC G C A GTTCGT3′
F1111–130 5′AGCGACGCC A CGAGTCCGAG3′
F2111–130 5′AGCGACGCC G CGAGTCCGAG3′
G196–115 5′TTCGTG C GGTTCGACAGCGA3′
G296–115 5′TTCGTG A GGTTCGACAGCGA3′
H1121–140 5′CGAGTCCG A G AGA GG A GCC G 3′
H2121–140 5′CGAGTCCG A G GAT GG C GCC C 3′
H3121–140 5′CGAGTCCG A G GAC GG A GCC C 3′
H4121–140 5′CGAGTCCG A G GAA GG A GCC G 3′
I1141–160 5′CGGGCGCC A TGG A T A GAGCA3′
I2141–160 5′CGGGCGCC G TGG G T G GAGCA3′
I3141–160 5′CGGGCGCC G TGG A T A GAGCA3′
J1161–180 5′ G GAGGGGCCGGA AT ATTGGG3′
J2161–180 5′ A GAGGGGCCGGA GT ATTGGG3′
J3161–180 5′ G GAGGGGCCGGA GC ATTGGG3′
J4161–180 5′ G GAGGGGCCGGA GT ATTGGG3′
K1181–200 5′AC C GG A A C ACAC A GA TCTAC 3′
K2181–200 5′AC C GG A A C ACAC A GA TCTTC 3′
K3181–200 5′AC C GG G A G ACAC A GA TCTCC 3′
K4181–200 5′AC C GG A A C ACAC A GA TCTGC 3′
K5181–200 5′AC C GG A A C ACAC A GA TCTCC 3′
K6181–200 5′AC C GG G A G ACAC G GA ACATG 3′
K7181–200 5′AC C GG G A T ACAC A GA TCTCC 3′
K8181–200 5′AC C GG G A G ACAC A GA TCTGC 3′
K9181–200 5′AC C GG G A G ACAC A GA AGTAC 3′
K10181–200 5′AC G GG G A G ACAC G GA ACATG 3′
K11181–200 5′AC C GG G A G ACAC A GA TCTTC 3′
L1201–220 5′AAG GC C CAGG C A CAGACT G A3′
L2201–220 5′AAG AC C AACA C A CAGACT T A3′
L3201–220 5′AAG GC C TCCG C G CAGACT T A3′
L4201–220 5′AAG GC C AAGG C A CAGACT T A3′
L5201–220 5′AAG GC C AAGG C A CAGACT G A3′
L6201–220 5′AAG CG C CAGG C A CAGACT G A3′
L7201–220 5′AAG AC C AACA C A CAGACT G A3′
M1216–235 5′ACT G ACCGAG A G AG CCTGCG3′
M2216–235 5′ACT T ACCGAG A G AA CCTGCG3′
M3216–235 5′ACT T ACCGAG A G AG CCTGCG3′
M4216–235 5′ACT G ACCGAG A G GA CCTGCG3′
M5216–235 5′ACT T ACCGAG A G GA CCTGCG3′
M6216–235 5′ACT G ACCGAG T G AG CCTGCG3′
M7216–235 5′ACT G ACCGAG T G GG CCTGCG3′
M8216–235 5′ACT G ACCGAG A G AA CCTGCG3′
N1231–250 5′CTGCG C A C C GC GC T C C GCTA3′
N2231–250 5′CTGCG G A T C GC GC T C C GCTA3′
N3231–250 5′CTGCG G A C C CT GC T C C GCTA3′
N4231–250 5′CTGCG G A A C CT GC T C C GCTA3′
N5231–250 5′CTGCG G A A C CT GC G C G GCTA3′
O1251–270 5′CTACAACCAGAGCGAGG A CG3′
O2251–270 5′CTACAACCAGAGCGAGG C CG3′
B. HLA-B Exon 3
A105–24 5′TCACA CCCTC CAG AGC ATGT3′
A205–24 5′TCACA TCATC CAG AGG ATGT3′
A305–24 5′TCACA CTTGG CAG ACG ATGT3′
A405–24 5′TCACA CCCTC CAG TGG ATGT3′
A505–24 5′TCACA CTTGG CAG AGG ATGT3′
A605–24 5′TCACA CCCTC CAG ACG ATGT3′
A705–24 5′TCACA CCCTC CAG AAT ATGT3′
A805–24 5′TCACA TCATC CAG AGC ATGT3′
A905–24 5′TCACA CCATC CAG AGG ATGT3′
A1005–24 5′TCACA TCATC CAG GTG ATGT3′
A1105–24 5′TCACA CCCTC CAG AGG ATGT3′
B121–40 5′ATGT AC GGCTGCGAC G TGGG3′
B221–40 5′ATGT AT GGCTGCGAC C TGGG3′
B321–40 5′ATGT TT GGCTGCGAC G TGGG3′
B421–40 5′ATGT AA GGCTGCGAC G TGGG3′
B521–40 5′ATGT CT GGCTGCGAC G TGGG3′
B621–40 5′ATGT AC GGCTGCGAC C TGGG3′
B721–40 5′ATGT TT GGCTGCGAC C TGGG3′
B821–40 5′ATGT AT GGCTGCGAC A TGGG3′
B921–40 5′ATGT AT GGCTGCGAC G TGGG3′
C141–60 5′GCC G GACGGGCGC C TCCTCC3′
C241–60 5′GCC C GACGGGCGC T TCCTCC3′
C341–60 5′GCC C GACGGGCGC C TCCTCC3′
D161–80 5′GCGGG C A TG ACCAG TAC GCC3′
D261–80 5′GCGGG C A TA ACCAG TAC GCC3′
D361–80 5′GCGGG C A TA ACCAG TTA GCC3′
D461–80 5′GCGGG T A TA ACCAG TTC GCC3′
D561–80 5′GCGGG C A TG ACCAG TCC GCC3′
D661–80 5′GCGGG T A TG ACCAG TCC GCC3′
D761–80 5′GCGGG T A CC ACCAG GAC GCC3′
D861–80 5′GCGGG C A TG ACCAG TTC GCC3′
D961–80 5′GCGGG C A TA ACCAG TTC GCC3′
D1061–80 5′GCGGG T A TG ACCAG GAC GCC3′
D1161–80 5′GCGGG T A TA ACCAG TTA GCC3′
D1261–80 5′GCGGG T A TG ACCAG TAC GCC3′
E181–100 5′TACGACGGCAA A GATTACAT3′
E281–100 5′TACGACGGCAA G GATTACAT3′
F1111–130 5′GAGGACCTG A GCTCCTGGAC3′
F2111–130 5′GAGGACCTG C GCTCCTGGAC3′
G1131–150 5′CGC C GCGGACA CG GC G GCTC3′
G2131–150 5′CGC G GCGGACA CC GC G GCTC3′
G3131–150 5′CGC C GCGGACA AG GC G GCTC3′
G4131–150 5′CGC C GCGGACA CG GC A GCTC3′
G5131–150 5′CGC C GCGGACA CC GC G GCTC3′
G6131–150 5′CGC G GCGGACA CG GC G GCTC3′
H1151–170 5′AGATC A CCCAGC T CAAGTGG3′
H2151–170 5′AGATC T CCCAGC G CAAGTTG3′
H3151–170 5′AGATC A CCCAGC G CAAGTGG3′
I1171–190 5′GAGGCGGCCCGTG A GGCGGA3′
I2171–190 5′GAGGCGGCCCGTG T GGCGGA3′
J1191–210 5′GCAG CGG AGA G CCTACCTGG3′
J2191–210 5′GCAG GAC AGA G CCTACCTGG3′
J3191–210 5′GCAG TGG AGA G CCTACCTGG3′
J4191–210 5′GCAG CTG AGA A CCTACCTGG3′
J5191–210 5′GCAG CGG AGA A CCTACCTGG3′
J6191–210 5′GCAG CTG AGA G CCTACCTGG3′
K1211–230 5′AGG G C GA GTGCGTGGA GTG G3′
K2211–230 5′AGG G C CT GTGCGTGGA GTG G3′
K3211–230 5′AGG G C CT GTGCGTGGA CGG G3′
K4211–230 5′AGG G C CT GTGCGTGGA GTC G3′
K5211–230 5′AGG G C AC GTGCGTGGA GTC G3′
K6211–230 5′AGG G C CT GTGCGTGGA GGG G3′
K7211–230 5′AGG A C CT GTGCGTGGA GTC G3′
K8211–230 5′AGG G C AC GTGCGTGGA GTG G3′
L1231–250 5′CTCCGCAGA C ACCTGGAGAA3′
L2231–250 5′CTCCGCAGA T ACCTGGAGAA3′
M1257–276 5′GGACA A GCTG G AGCGCGC T G3′
M2257–276 5′GGACA C GCTG G AGCGCGC G G3′
M3257–276 5′GGAGA C GCTG C AGCGCGC G G3′

[i] Each oligonucleotide probe has a 15 dT linker at its 5′-end. The polymorphic sites in each probe are in bold and underlined.