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Table 1.

Details of the Markers Incorporated within Six Published Prior Nomenclature Systems, Illustrated in Figure 1

System	Name	Derived state at	Ancestral state at	Name by lineage
Tyler-Smith	1	92R7	M3, SRY_10831b, SRY₋₂₆₂₇	P^*(xR1b8,R1a,Q3)
& Jobling	2	SRY_10831a	50f2(P), RPS4Y₇₁₁, YAP
(2000)			Apt, M52, 12f2a, M9	BR^*(xB2b,CE,F1,H,JK)
	3	SRY_10831b		R1a
	4	YAP	SRY₄₀₆₄	DE^*(xE)
	5	47z		O2b1
	6	50f2(P)		B2b
	7		SRY_10831a, MEH1	Y^*(xBR,A2)
	8	M2		E3a
	9	12f2a		J
	10	RPS4Y₇₁₁		C
	12	LLY22g	Tat	N^*(xN3)
	13	LINE1		O3c
	15	Apt		F1
	16	Tat		N3
	18	M3		Q3
	20	SRY₊₄₆₅	47z	O2b^*
	21	SRY₄₀₆₄	P2	E^*(xE3)
	22	SRY₋₂₆₂₇		R1b8
	23	SRY₉₁₃₈		K1
	24	M4		M
	25	P2	M2	E3^*(xE3a)
	26	M9	SRY₉₁₃₈, M20, M4, LLY22g, SRY₊₄₆₅, LINE1, 92R7	K^*(xK1,LN,O2b,O3c,P)
	27	MEH1		A2
	28	M20		L
	35	M52		H
Underhill	I	M91		A
(2000)	II	M60		B
	III	M96		E
	IV	M174		D
	V	RPS4Y₇₁₁		C
	VI	M89	M9	F^*(xK)
	VII	M175		O
	VIII	M9	M175, M45	K^*(xO,P)
	IX	M173		R1
	X	M45	M173	P^*(R1)
Hammer	1A		P3, SRY_10831a	Y^*(xBR,A2)
(2001)	2	P3		A2
	1B	SRY_10831a	RPS4Y₇₁₁, YAP, P14	BR^*(xF,DE,C)
	1C	P27	SRY_10831b, P25, M3	P^*(xR1a,R1b,Q3)
	1D	SRY_10831b		R1a
	1E	SRY₉₁₃₈		K1
	1F	RPS4Y₇₁₁		C
	1G	M3		Q3
	1Ha	P15	P16	G2^*
	1Hb	P16		G2a
	1I	Tat		N3
	1L	P25		R1b
	1U	M9	P27, Tat	K^*(xP,N3)
	1R	P14	12f2a, P15, M9	F^*(xJ,G2,K)
	3G	YAP	SRY₄₀₆₄	DE^*(xE)
	3A	SRY₄₀₆₄	P2	E^*(xE3)
	4	P2	P1	E3^*(xE3a)
	5	P1		E3a
	Med	12f2a		J
Karafet	1		SRY_10831a, M13, P3, P4, M6, M14	Y^*(xBR,A2,A3b2)
(2001)
	2	M13		A3b2
	3	P4, P3, M6, M14	SRY_10831a	A2^*(xA2b)
	4	P28	SRY_10831a	A2b
	5	SRY_10831a	P9, 50f2(P)	BR^*(xCR,B2b)
	6	50f2(P)	P6, P7, P8, MSY2a	B2b^*(xB2b1,B2b4)
	7	P6		B2b1
	8	P7	P8, MSY2a	B2b4^*
	9	MSY2a		B2b4b
	10	P8		B2b4a
	11	M174	M15	D^*(xD1)
	12	M15		D1
	13	SRY₄₀₆₄	P2, P1	E^*(xE3)
	14	P2	P1	E3^*(xE3a)
	15	P1		E3a
	16	RPS4Y₇₁₁, M216	M8, M217, P33	C^*(xC1,C2a,C3)
	17	M217		C3
	18	P33		C2a
	19	M8		C1
	20	P14	P15, P19, 12f2, M9	F^*(xG2,I,J,K)
	21	P19		I
	22	P15		G2
	23	12f2a	M172	J^*(xJ2)
	24	M172		J2
	25	M9	M20, M4, Tat, M175, P27	K^*(xL,M,N3,O,P)
	26	Tat		N3
	27	M20		L
	28	M175	M119, P31, M122	O^*
	29	M122	LINE-1, M134	O3^*(xO3c,O3e)
	30	M134		O3e
	31	LINE-1		O3c
	32	M119, MSY2b		O1
	33	P31	M95, SRY₊₄₆₅	O2^*
	34	M95		O2a
	35	SRY₊₄₆₅	47z	O2b^*
	36	47z		O2b1
	37	M4, M5	P22	M^*(xM2)
	38	P22	M16	M2^*(xM2a)
	39	M16		M2a
	40	P27	M207	P^*(xQ3,R)
	41	M3		Q3
	42	M207	M173	R^*
	43	M173	SRY_10831b, P25	R1^*
	44	P25		R1b^*
	45	SRY_10831b		R1a^*
Semino	Eu1	M13		A3b2
(2000)	Eu2	M2		E3a
	Eu3	SRY₄₀₆₄	M2, M35	E^*(xE3a,E3b)
	Eu4	M35		E3b
	Eu5	YAP	SRY₄₀₆₄	DE^*(xE)
	Eu6	RPS4Y₇₁₁		C
	Eu7	M170	M26	I^*(xI1b2)
	Eu8	M26		I1b2
	Eu9	M172		J2
	Eu10	M89	M170, M172, M201, M69, M9	F^*(xI,J2,G,H,K)
	Eu11	M201		G
	Eu12	M69		H
	Eu13	Tat	M178	N3^*
	Eu14	M178		N3a
	Eu15	M70		K2
	Eu16	M9	M70, Tat, M11, M45	K^*(xK2,N3,L,P)
	Eu17	M11		L
	Eu18	M173	M17	R1^*(xR1a1)
	Eu19	M17		R1a1
	Eu20	M45	M173, M124, M3	P^*(xR1,Q3,P1)
	Eu21	M124		P1
	Eu22	M3		Q3
Su	H1	M89,	YAP	Y^*(xDE,F)
(1999)	H2	YAP	M15	DE^*(xD1)
	H3	M15		D1
	H4	M89	M9	F^*(xK)
	H5	M9	M122, M119, M95, M45, M5	K^*(xO3,O1,O2a,P,M)
	H6	M122	M7, M134	O3^*(xO3d,O3e)
	H7	M7		O3d
	H8	M134		O3e
	H9	M119	M50	O1^*(xO1b)
	H10	M50		O1b
	H11	M95	M88	O2a^*
	H12	M88		O2a1
	H13	M120		Q1
	H14	M45	M120, M3, M17	P^*(xQ1,Q3,R1a1)
	H15	M3		Q3
	H16	M17		R1a1
	H17	M5		M
Capelli	A		SRY_10831a	Y^*(xBR)
(2001)	B	SRY_10831a	RPS4Y₇₁₁, M9	BR^*(xC,K)
	C	RPS4Y₇₁₁		C
	D	92R7		P
	E	M4		M
	F	M9	92R7, M4, M175	K^*(xP,M,O)
	G	M95		O2a
	H	M119		O1
	I	M175	M95, M119, M122	O^*(xO1,O2a,O3)
	L	M122		O3

[i] Lineages defined solely by the presence of a derived marker are monophyletic. Lineages defined by the presence of a derived marker and the absence of the derived state at other markers are potentially paraphyletic and under the present nomenclature are differentiated by an asterisk (*), unless they are known to be monophyletic.