Table 1.

PAX6-Binding Sequences in the Human Genome

Name sc-DNA library Sequence (5′–3′) Homology to SINE Location Binding specificity Binding affinity[ii]
GCα1BLs5[i] MboI TTAGTTCCAGGTCAG Rodent B1Intron 6 ofGCα1 PAX60.60
Tsp11Bs Tsp509I AATTAGCCAGGCATGGTAGCACA Primate AluMultiplePAX60.56
Mse180B1s MseI TACAAGCTTCCGCATGAATGGTGCTGGT NoneIntron 6 ofCyp39A1 PD60.65
Tsp2As1 Tsp509I GGCCAGTCACGCGTGTAATT NoneAL157938PAX61.5

[i] Data from Zhou et al. (2000).

[ii] Binding affinity to PAX6 relative to CD19-2(A).