Table 1.

Characteristics of NotI and AscI Restriction Sites

NotI AscI
Total number of restriction sites in the human genome[i] 96284935
Number of restriction sites in CpG islands8239 (86%)4071 (83%)
Number of restriction sites in repetitive elements, not CpG islands520 (5%)332 (7%)
Frequency of restriction sites near 5′ end of a known gene3357 (34.9%)1612 (32.7%)
Frequency of restriction sites near 3′ end of a known gene1328 (13.8%)725 (15%)
Frequency of restriction sites inside a gene1392 (14.5%)738 (15%)
Frequency of restriction sites falling near ESTs2.221 (23.1%)1001 (20.3%)
Frequency of CpG islands with both NotI and AscI sites1100 (3.7%)

[i] August 6, 2001 draft assembly of UCSC.