Genes in Orthologous Regions
| Gene | Rice (japonica) | Rice (indica) | Sorghum | Maize | Designation | |
| 1 | CR1 | 9366–14262(+) | 2846–7670(+) | 148946–154211(+) | 189–4312(+) | Conserved unknown gene |
| 2 | 156139–157293(+) | Glutathione transferase | ||||
| 3 | 157758–159936(−) | Unknown gene | ||||
| 4 | 6462–8850(+) | Putative transporter | ||||
| 5 | 11192–18668(+) | Plastid division protein | ||||
| 6 | CR2 | 19445–22363(+) | 11475–14354(+) | 169053–171854(+) | 36233–37925(+) | php200725marker, unknown gene |
| 7 | 175829–176626(+)[ii] | First copy of 22-kDkafirin | ||||
| 8 | 93984–94784(+)[ii] | First copy of 22-kDzein | ||||
| 9 | 178451–180151(−) | Fatty acid elongase | ||||
| 10 | 197864–200950(+) | Receptor kinase | ||||
| 11 | 202842–203560(+) | Duplicatedphp200725copy | ||||
| 12 | 206881–212502(+) | Mla1-like disease-resistance gene | ||||
| 13 | 250052–250858(+)[ii] | Last copy of 22-kDkafirin | ||||
| 14 | CRa | 255469–256047(+) | 202981–203565(+) | Disease response gene | ||
| 15 | 261759–262472(+)[ii] | Last copy of 22-kDzein | ||||
| 16 | CRb | 272671–279846(+) | 293515–295648(+) | Cytochrome P450 | ||
| 17 | 290165–293582(+) | Mla1-like disease-resistance gene | ||||
| 18 | 300318–303679(−) | Mla1-like disease-resistance gene | ||||
| 19 | 315276–316808(−) | UTP-glucosyl transferase | ||||
| 20 | 321692–325061(−) | Mla1-like disease-resistance gene | ||||
| 21 | CR3 | 38828–41539(−) | 25162–27849(−) | 329439–331608(−) | 334124–336230(−) | Receptor kinase |
| 22 | CR3 | 42745–47961(−) | 28725–34455(−) | 332518–338050(−) | 337394–341159(−) | Sugar transporter |
| 23 | 345917–346886(−) | Cytidine deaminase | ||||
| 24 | 347494–349825(+) | Ribosomal protein (S12) | ||||
| 25 | CR4 | 57473–62798(+) | 50047–55354(+) | 354923–361633(+) | 350586–358453(+) | RNA-binding protein |
| 26 | CR4 | 64338–66962(+) | 56888–59512(+) | 362635–364102(+) | 373678–376578(+) | Peptidase-S26 |
[i] Numbers indicate start and end positions of predicted genes: (+) or (−) refer to the transcriptional direction of the predicted genes.
[ii] Only the first and last copies of the amplified 22-kD storage-protein gene are indicated here. See Fig. 1 for the relative positions of other copies.