Table 1.

SNP Information Obtained From Our Discovery Panel

Breed Callipyge genotype[ii] Animal Total number SNP genotypes[iii] Unique positions Heterozygous positions Het[iv]
Dorset(D)CN198812900104560010.0000048
DorsetCN199112900102060610.0000048
CIII[i] CC20002384492657500.0
CIIICC20002388689856400.0
Romanov(R)NN199214022815517860.0004103
RomanovNN1992143058995742460.0011738
DorsetCN19901250010065961450.0006919
DorsetCN1992120428865612360.0011261
DorsetCN1992120928505402320.0011070
DorsetCN199212900951573810.0003865
F1DxRCN1993601058875592310.0011022
F1DxRCN1993603658225211840.0008779

[i] CIII population contains introgressed CLPGallele from Dorset into terminal sire composite population (1/2 Columbia; 1/4 Suffolk; 1/4 Hampshire). The new composite population is on average 1/16 Dorset germplasm.

[ii] Genotype at CLPG locus with C representing the mutant allele, N the normal allele; the paternally-derived allele is listed first.

[iii] Multiple sequence reads contributed data for each animal-SNP combination.

[iv] Heterozygosity per base pair over the covered region of 209,580.