Table 1.

The Interspersed Repeat Content of the CMT1A/HNPP Region

Repeat type Total no. of elements Coverage (bp) Coverage (%)
SINEs 703 168,239 bp 11.84%
Alus511141,709 bp9.97%
MIRs19226,530 bp1.87%
LINEs 463 262,132 bp 18.45%
LINE1245190,833 bp13.43%
LINE219059,880 bp4.21%
Other LINEs2811,419 bp0.81%
LTR elements 246 115,140 bp 8.10%
MaLRs12049,012 bp3.45%
Retroviral5021,746 bp1.53%
MER4 group4329,094 bp2.05%
Other LTRs3315,288 bp1.07%
DNA elements 194 48,268 bp 3.40%
MER1 type13528,178 bp1.98%
MER2 type2611,345 bp0.80%
Mariners84,332 bp0.30%
Other DNA elements254,413 bp0.32%
Unclassified 2 319 bp 0.02%
Total interspersed repeats 1608  594,098 bp 41.80%
Small RNA5668 bp0.05%
Simple repeats24713,610 bp0.96%
Low complexity1448,140 bp0.57%
Total2004616,328 bp43.37%
Total sequence length1,421,129 bp
GC %   41.57%