Functional Classification of the Lactococcus lactis Protein-Coding Genes#
| AMINO-ACID BIOSYNTHESIS | ||
| Aromatic amino-acid family | ||
| aroA | 1802 | 3-phosphoshikimate 1-carboxyvinyltransferase |
| aroB | 1814 | 3-dehydroquinate synthase |
| aroC | 1811 | chorismate synthase |
| aroD | 1690 | 3-dehydroquinate dehydratase |
| aroE | 1815 | shikimate 5-dehydrogenase |
| aroF | 120 | Tyr-sensitive phospho-2-dehydro-deoxyheptonate aldolase |
| aroH | 1281 | Trp-sensitive phospho-2-dehydro-deoxyheptonate aldolase |
| aroK | 1801 | shikimate kinase |
| pheA | 1801 | prephenate dehydratase |
| trpA | 1494 | tryptophan synthase alpha chain |
| trpB | 1495 | tryptophan synthase beta chain |
| trpC | 1498 | indole-3-glycerol phosphate synthase |
| trpD | 1499 | anthranilate phosphoribosyltransferase |
| trpE | 1501 | anthranilate synthase component I |
| trpF | 1497 | phosphorybosyl-anthranilate isomerase |
| trpG | 1500 | anthranilate synthase component II |
| tyrA | 1803 | prephenate dehydrogenase |
| Aspartate family | ||
| asnB | 357 | asparagine synthetase B |
| asnH | 2312 | asparagine synthetase |
| aspB | 1897 | aspartate aminotransferase |
| aspC | 163 | aspartate aminotransferase |
| ceo | 1265 | N5-carboxyethyl-ornithine synthase |
| dapA | 1665 | dihydrodipicolinate synthase |
| dapB | 1605 | dihydrodipicolinate reductase |
| hom | 1172 | homoserine dehydrogenase |
| lysA | 1314 | diaminopimelate decarboxylase |
| metA | 1997 | homoserine O-succinyltransferase |
| metB1 | 1996 | cystathionine gamma-synthase |
| metB2 | 791 | cystathionine gamma-synthase |
| metE | 1284 | 5-methionine synthase |
| metF | 1282 | 5,10-methylenetetrahydrofolate reductase |
| thrA | 748 | aspartokinase |
| thrB | 1173 | homoserine kinase |
| thrC | 2173 | threonine synthase |
| Branched chain family | ||
| ilvA | 1251 | threonine deaminase |
| ilvB | 1248 | acetolactate synthase large subunit |
| ilvC | 1250 | ketol-acid reductoisomerase |
| ilvD | 1247 | dihydroxy-acid dehydratase |
| ilvN | 1249 | acetolactate synthase small subunit |
| leuA | 1240 | 2-isopropylmalate synthase |
| leuB | 1242 | 3-isopropylmalate dehydrogenase |
| leuC | 1244 | 3-isopropylmalate dehydratase large subunit |
| leuD | 1245 | 3-isopropylmalate dehydratase small subunit |
| Glutamate family | ||
| argB | 808 | acetylglutamate kinase |
| argC | 805 | N-acetyl-gamma-glutamyl-phosphate reductase |
| argD | 807 | acetylornithine aminotransferase |
| argE | 560 | acetylornithine deacetylase |
| argG | 127 | argininosuccinate synthase |
| argH | 129 | argininosuccinate lyase |
| argJ | 806 | ornithine acetyltransferase |
| glnA | 2283 | glutamine synthetase |
| gltA | 668 | citrate synthase |
| gltB | 1319 | glutamate synthase large subunit |
| gltD | 1316 | glutamate synthase small subunit |
| proA | 1651 | gamma-glutamyl phosphate reductase |
| proB | 1652 | glutamate 5-kinase |
| proC | 1953 | pyrroline-5-carboxylate reductase |
| Histidine family | ||
| hisA | 1236 | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase |
| hisB | 1234 | imidazoleglycerol-phosphate dehydratase |
| hisC | 1229 | histidinol-phosphate aminotransferase |
| hisD | 1232 | histidinol dehydrogenase |
| hisF | 1237 | cyclase HisF |
| hisG | 1231 | ATP phosphoribosyltransferase |
| hisH | 1235 | amidotransferase |
| hisI | 1237 | phosphoribosyl-AMP cyclohydrolase |
| hisK | 1238 | histidinol phosphatase |
| hisZ | 1230 | ATP phosphoribosyltransferase regulatory subunit |
| Serine family | ||
| cysD | 77 | O-acetylhomoserine sulfhydrylase |
| cysE | 1921 | serine acetyltransferase |
| cysK | 792 | cysteine synthase |
| cysM | 527 | cysteine synthase |
| glyA | 592 | serine hydroxymethyltransferase |
| serA | 595 | D-3-phosphoglycerate dehydrogenase |
| serB | 596 | phosphoserine phosphatase |
| serC | 594 | phosphoserine aminotransferase |
| BIOSYNTHESIS OF COFACTORS, PROSTHETIC GROUPS, AND CARRIERS | ||
| Folic acid | ||
| dfrA | 1163 | dihydropholate reductase |
| fhs | 961 | formyltetrahydrofolate synthetase |
| folB | 1166 | dihydroneopterin aldolase |
| folC | 1169 | folylpolyglutamate synthase |
| folD | 877 | tetrahydrofolate dehydrogenase/cyclohydrolase |
| folE | 1167 | GTP cyclohydrolase I |
| folP | 1168 | dihydropteroate synthase |
| pabA | 1349 | para-aminobenzoate synthase component II |
| pabB | 1348 | para-aminobenzoate synthase component I |
| Heme and porphyrin | ||
| hemH | 1609 | ferrohelatase |
| hemK | 589 | protoporphyrinogen oxidase |
| hemN | 1154 | oxygen-independent coproporphyrogen III oxidase |
| Menaquinone and ubiquinone | ||
| ispA | 881 | farnesyl diphosphate synthase |
| ispB | 1380 | heptaprenyl diphosphate synthase component II |
| menB | 735 | dihydroxynaphthonic acid synthase |
| menD | 737 | 2-oxoglutarate decarboxylase |
| menE | 734 | O-succinylbenzoic acid-CoA ligase |
| menF | 739 | menaquinone-specific isochorismate synthase |
| menX | 736 | protein in menaquinone biosynthesis pathway |
| preA | 187 | prenyl transferase |
| ubiE | 1718 | menaquinone biosynthesis methylase |
| yhdB | 732 | racemase |
| Pantothenate | ||
| coaA | 1467 | pantothenate kinase |
| dfpA | 567 | pantothenate metabolism flavoprotein |
| dfpB | 568 | flavoprotein |
| panE | 1358 | ketopantoate reductase |
| Riboflavin and cobalamin | ||
| cobC | 1889 | alpha-ribazole-5'-phosphate phosphatase |
| cobQ | 1115 | cobyric acid synthase |
| ribA | 1024 | GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase |
| ribB | 1023 | ribiflavin synthase alpha chain |
| ribC | 1142 | riboflavin kinase |
| ribG | 1023 | riboflavin-specific deaminase |
| ribH | 1025 | ribiflavin synthase beta chain |
| Thioredoxin, glutaredoxin, and glutathione | ||
| gpo | 1402 | glutathione peroxidase |
| gshR | 864 | glutathione reductase |
| trxA | 1692 | thioredoxin |
| trxB1 | 966 | thioredoxin reductase |
| trxB2 | 1695 | thioredoxin reductase |
| trxH | 396 | thioredoxin H-type |
| Thiamin | ||
| apbE | 1125 | thiamine biosynthesis lipoprotein |
| thiD1 | 1295 | phosphomethylpyrimidine kinase |
| thiD2 | 485 | phosphomethylpyrimidine kinase |
| thiE | 1294 | thiamin-phosphate pyrophosphorylase |
| thiM | 1295 | hydroxyethylthiazole kinase |
| Pyridine nucleotides | ||
| nadE | 1110 | NAD-synthetase |
| yvdG | 2139 | pyridine nucleotide-disulfide oxidoreductase |
| CELL ENVELOPE | ||
| Membranes, lipoproteins, and porins | ||
| bmpA | 1462 | basic membrane protein A |
| cdsA | 2200 | phosphatidate cytidylyltransferase |
| clsA | 988 | cardiolipin synthase |
| clsB | 1188 | cardiolipin synthase |
| dgkA | 1095 | diacylglycerol kinase |
| lgt | 606 | prolipoprotein diacylglycerol transferase |
| pgsA | 2047 | CDP-diacylglycerol-phosphate phosphatidyltransferase |
| plpA | 318 | outer membrane lipoprotein precursor |
| plpB | 319 | outer membrane lipoprotein precursor |
| plpC | 320 | outer membrane lipoprotein precursor |
| plpD | 321 | outer membrane lipoprotein precursor |
| yfjC | 596 | acylphosphate phosphohydrolase |
| Murein sacculus and peptidoglycan | ||
| acmA | 269 | N-acetylmuramidase |
| acmB | 1977 | N-acetylmuramidase |
| acmC | 1403 | N-acetylmuramidase |
| acmD | 528 | N-acetylmuramidase |
| asd | 1667 | aspartate-semialdehyde dehydrogenase |
| dacA | 2356 | D-alanyl-D-alanine carboxypeptidase |
| dacB | 976 | D-alanyl-D-alanine carboxypeptidase |
| dal | 862 | alanine racemase |
| ddl | 341 | D-alanine-D-alanine ligase |
| glmU | 1952 | UDP-N-acetylglucosamine pyrophosphorylase |
| mraY | 892 | phospho-N-acetylmuramoyl-pentapeptide transferase |
| mreC | 2316 | cell shape determining protein |
| mreD | 2315 | cell shape determining protein |
| murA1 | 1314 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase |
| murA2 | 535 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase |
| murB | 1175 | UDP-N-acetylenolpyruvoylglucosamine reductase |
| murC | 2119 | UDP-N-acetylmuramate-alanine ligase |
| murD | 1634 | UDP-N-acetylmuramoylalanine D-glutamate ligase |
| murE | 1871 | UDP-MurNac-tripeptide synthetase |
| murF | 342 | D-Ala-D-Ala adding enzyme |
| murG | 1633 | peptidoglycan synthesis protein MurG |
| murI | 1313 | glutamate racemase |
| pbp1B | 393 | penicillin-binding protein 1B |
| pbp2A | 2178 | penicillin-binding protein 2a |
| pbp2B | 339 | penicillin-binding protein 2B |
| pbpX | 890 | penicillin-binding protein |
| ponA | 530 | penicillin-binding protein 1A |
| racD | 2310 | aspartate racemase |
| uppS | 2201 | undecaprenyl pyrophosphate synthetase |
| Surface polysaccharides, lipopolysaccharides and antigens | ||
| dltA | 1293 | D-alanine activating enzyme |
| dltB | 1291 | peptidoglycan biosynthesis protein |
| dltC | 1290 | D-alanyl carrier protein |
| dltD | 1290 | D-alanine transfer protein DltD |
| dltE | 145 | oxidoreductase |
| floL | 746 | flotillin-like protein |
| hasC | 1378 | UTP-glucose-1-phosphate uridylyltransferase |
| icaA | 681 | glycosyl transferase |
| icaB | 683 | intercellular adhesion protein IcaB |
| icaC | 684 | collagen adhesin |
| kdtB | 2239 | lipopolysaccharide core biosynthesis protein |
| mvaA | 1611 | hydroxymethylglutaryl-CoA reductase |
| mycA | 981 | myosin-crossreactive antigen |
| pspA | 2304 | glucosyltransferase-S |
| pspB | 2306 | glucosyltransferase-S |
| rgpA | 202 | rhamnosyltransferase |
| rgpB | 203 | rhamnosyltransferase |
| rgpE | 207 | glycosyltransferase |
| rgpF | 209 | polysaccharide biosynthesis protein |
| tagB | 953 | teichoic acid biosynthesis protein B |
| tagD1 | 220 | glycerol-3-phosphate cytidiltransferase |
| tagD2 | 951 | glycerol-3-phosphate cytidyltransferase |
| tagF | 952 | teichoic acid biosynthesis protein F |
| tagL | 936 | exopolysaccharide biosynthesis protein |
| tagX | 948 | teichoic acid biosynthesis protein |
| tagY | 945 | teichoic acid biosynthesis protein |
| tagZ | 943 | teichoic acid biosynthesis protein |
| ycbB | 212 | glycosyltransferase |
| ycbD | 213 | UDP-glucose 4-epimerase |
| ycbF | 215 | LPS biosynthesis protein |
| ycbG | 216 | LPS biosynthesis protein |
| ycbH | 217 | sugar transferase |
| ycbI | 218 | sugar transferase |
| ycbJ | 219 | LPS biosynthesis protein |
| ycbK | 214 | polysaccharide biosynthesis export protein |
| yijG | 899 | glycosyl transferase |
| yjeF | 949 | lipopolysaccharide biosynthesis protein |
| ymjE | 1297 | glycosyl transferase |
| ymjF | 1299 | UDP-N-acetylglucosamine 2-epimerase |
| yohH | 1478 | lipopolysaccharide biosynthesis protein |
| yohJ | 1479 | lipopolysaccharide biosynthesis protein |
| ysfC | 1853 | polysacharide biosynthesis protein |
| ywaF | 2206 | glycosyltransferase |
| ywaG | 2207 | lipopolysaccharide biosynthesis protein |
| CELLULAR PROCESSES | ||
| Cell division | ||
| ezrA | 2225 | cell division regulator |
| ftsA | 1940 | cell division protein FtsA |
| ftsE | 1000 | cell-division ATP-binding protein FtsE |
| ftsH | 27 | cell division protein FtsH |
| ftsK | 1705 | cell division protein FtsK |
| ftsQ | 1632 | cell division protein FtsQ |
| ftsW1 | 663 | cell division protein FtsW |
| ftsW2 | 908 | cell division protein FtsW |
| ftsX | 1001 | cell division protein |
| ftsY | 825 | cell division protein FtsY |
| ftsZ | 1938 | cell division protein FtsZ |
| gidA | 1915 | glucose inhibited division protein GidA |
| gidB | 1381 | glucose-inhibited division protein GidB |
| gidC | 1257 | glucose inhibited division protein GidC |
| mesJ | 24 | cell cycle protein MesJ |
| parA | 99 | chromosome partitioning protein |
| rodA | 917 | rod-shape determining protein |
| smc | 812 | chromosome segregation SMC protein |
| Cell killing | ||
| hly | 498 | hemolysin like protein |
| Chaperones | ||
| dnaK | 979 | DnaK protein |
| groEL | 400 | 60 KD chaperonin |
| groES | 399 | 10 KD chaperonin |
| sugE | 25 | SugE protein |
| Detoxification | ||
| ahpC | 336 | alkyl hydroperoxide reductase |
| ahpF | 337 | alkyl hydroperoxide reductase |
| sodA | 413 | superoxide dismutase |
| Protein and peptide secretion | ||
| ffh | 1658 | signal recognition particle protein Ffh |
| lspA | 1026 | lipoprotein signal peptidase |
| secA | 118 | preprotein translocase SecA subunit |
| secE | 2175 | preprotein translocase SecE subunit |
| secG | 967 | protein-export protein SecG |
| secY | 2159 | preprotein translocase SecY subunit |
| sipL | 2351 | signal peptidase I |
| tig | 536 | trigger factor |
| Transformation | ||
| coiA | 1785 | competence protein CoiA |
| comC | 2104 | type 4 prepilin-like protein specific leader peptidase |
| comEA | 1833 | competence protein ComEA |
| comEC | 1832 | competence protein ComEC |
| comFA | 1098 | competence protein ComFA |
| comFC | 1097 | competence protein ComFC |
| comGA | 2189 | competence protein ComGA |
| comGB | 2188 | competence protein ComGB |
| comGC | 2187 | competence protein ComGC |
| comGD | 2187 | competence protein ComGD |
| comX | 2224 | competence regulator ComX |
| dprA | 1254 | DNA processing SMF protein |
| radA | 2150 | DNA repair protein RadA |
| recQ | 1874 | ATP-dependent DNA helicase RecQ |
| CENTRAL INTERMEDIARY METABOLISM | ||
| General | ||
| metK | 1971 | S-adenosylmethionine synthetase |
| pcaC | 2052 | gamma-carboxymuconolactone decarboxylase |
| Amino sugars | ||
| femD | 436 | phosphoglucosamine mutase |
| glmS | 1035 | glucosamine-fructose-6-phosphate aminotransferase |
| nagA | 1374 | N-acetylglucosamine-6-phosphate deacetylase |
| nagB | 1615 | glucosamine-6-P isomerase |
| ylfH | 1157 | N-acetylglucosamine catabolic protein |
| ypcD | 1524 | endo-beta-N-acetylglucosaminidase |
| Degradation of polysaccharides | ||
| agl | 1732 | alpha-glucosidase |
| amyL | 1278 | alpha-amylase |
| amyY | 1734 | alpha-amylase |
| apu | 703 | amylopullulanase |
| chiA | 2027 | chitinase |
| dexA | 1736 | oligo-1,6-glucosidase |
| dexB | 1526 | alpha 1-6-glucosidase |
| dexC | 1738 | neopullulanase |
| lnbA | 1527 | lacto-N-biosidase |
| xynD | 282 | endo-1,4-beta-xylanase D |
| yucG | 2028 | chitin binding protein |
| Phosphorus compounds | ||
| apl | 719 | alkaline phosphatase |
| Polyamine biosynthesis | ||
| yqfF | 1657 | spermidine acetyltransferase |
| Other | ||
| glgA | 699 | glycogen synthase |
| glgB | 147 | 1,4-alpha-glucan branching enzyme |
| glgC | 697 | glucose-1-phosphate adenylyltransferase |
| glgD | 698 | glucose-1-phosphate adenylyltransferase |
| glgP | 701 | glycogen phosphorylase |
| mapA | 1730 | maltosephosphorylase |
| xylH | 568 | 4-oxalocrotonate tautomerase |
| ENERGY METABOLISM | ||
| Aerobic | ||
| cbr | 144 | carbonyl reductase |
| noxA | 841 | NADH dehydrogenase |
| noxB | 842 | NADH dehydrogenase |
| noxC | 795 | NADH oxidase |
| noxD | 2195 | NADH oxidase |
| noxE | 397 | NADH oxidase |
| poxL | 2130 | pyruvate oxidase |
| yahI | 78 | short-chain type dehydrogenase |
| ybdE | 134 | oxidoreductase |
| ybiE | 186 | oxidoreductase |
| ycdG | 234 | oxidoreductase |
| ycgD | 264 | oxidoreductase |
| ycgG | 267 | oxidoreductase |
| yddB | 333 | oxidoreductase |
| ygcA | 620 | oxidoreductase |
| yhgA | 760 | oxidoreductase |
| yiaB | 802 | oxidoreductase |
| ymgK | 1268 | oxidoreductase |
| yneD | 1343 | oxidoreductase |
| ypaI | 1509 | oxidoreductase |
| ypgB | 1562 | oxidoreductase |
| yphA | 1571 | NADH dehydrogenase |
| yphC | 1574 | oxidoreductase |
| ypiA | 1580 | oxidoreductase |
| ypjA | 1591 | dehydrogenase |
| ypjF | 1595 | oxidoreductase |
| ypjH | 1599 | oxidoreductase |
| yrbA | 1711 | oxidoreductase |
| yrfB | 1751 | NADH-dependent oxidoreductase |
| yrjB | 1791 | oxidoreductase |
| yrjC | 1792 | iron-binding oxidase subunit |
| ysjB | 1892 | oxidoreductase |
| yteC | 1944 | oxidoreductase |
| yudI | 2036 | oxidoreductase |
| yugB | 2066 | oxidoreductase |
| yugC | 2068 | dehydrogenase |
| yxdE | 2338 | oxidoreductase |
| Amino acids and amines | ||
| ansB | 743 | L-asparaginase |
| araT | 57 | aromatic amino acid specific aminotransferase |
| arcA | 2115 | arginine deiminase |
| arcB | 2114 | ornithine carbamoyltransferase |
| arcC1 | 2111 | carbamate kinase |
| arcC2 | 2110 | carbamate kinase |
| arcC3 | 1752 | carbamate kinase |
| arcT | 2109 | aminotransferase |
| argF | 809 | ornithine carbamoyltransferase |
| bcaT | 1322 | branched-chain amino acid aminotransferase |
| gadB | 1325 | glutamate decarboxylase |
| hicD | 490 | L-2-hydroxyisocaproate dehydrogenase |
| ipd | 1340 | indole-3-pyruvate decarboxylase |
| otcA | 1757 | ornithine carbamoyltransferase |
| pdc | 2011 | phenolic acid decarboxylase |
| pfs | 1950 | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase |
| sdaA | 845 | alpha-subuni L-serine dehydratase |
| sdaB | 844 | beta-subunit of L-serine dehydratase |
| yciA | 281 | amino acid amidohydrolase |
| yjiB | 983 | amino acid aminohydrolase |
| ytjE | 1995 | aminotransferase |
| ywjF | 2299 | 3-hydroxyisobutyrate dehydrogenase |
| Anaerobic | ||
| dhaK | 245 | dihydroxyacetone kinase |
| dhaL | 246 | dihydroxyacetone kinase |
| dhaM | 247 | dihydroxyacetone kinase |
| glpD | 1271 | glycerol-3-phosphate dehydrogenase |
| glpK | 1273 | glycerol kinase |
| gpdA | 1377 | glycerol-3-phosphate dehydrogenase |
| lctO | 1280 | L-lactate oxidase |
| ylbE | 1120 | oxidoreductase |
| ATP-proton motive force interconversion | ||
| atpA | 1826 | ATP synthase alpha subunit |
| atpB | 1829 | ATP synthase subunit a |
| atpD | 1824 | ATP synthase alpha subunit |
| atpE | 1823 | ATP synthase epsilon subunit |
| atpF | 1828 | ATP synthase subunit b |
| atpG | 1825 | ATP synthase gamma subunit |
| atpH | 1828 | ATP synthase delta subunit |
| Electron transport | ||
| cydA | 708 | cytochrome D ubiquinol oxidase subunit I |
| cydB | 710 | cytochrome D ubiquinol oxidase subunit II |
| fer | 1762 | ferredoxin |
| ndrH | 1006 | glutaredoxin-like protein NrdH |
| ndrI | 1005 | ribonucleotide reductase |
| nifJ | 431 | pyruvate-flavodoxin oxidoreductase |
| nifS | 1928 | pyridoxal-phosphate dependent aminotransferase NifS |
| nifU | 1848 | NifU protein |
| nifZ | 523 | pyridoxal-phosphate dependent aminotransferase |
| qor | 724 | quinone oxidoreductase |
| yfiJ | 588 | NADPH-flavin oxidoreductase |
| yfjE | 598 | flavodoxin |
| yviC | 2181 | FMN-binding protein |
| Entner-Doudoroff | ||
| kdgA | 1672 | 2-dehydro-3-deoxyphosphogluconate aldolase |
| kdgK | 1673 | 2-dehydro-3-deoxygluconokinase |
| Fermentation | ||
| ackA1 | 2091 | acetate kinase |
| ackA2 | 2089 | acetate kinase |
| adhA | 1873 | alcohol dehydrogenase |
| adhE | 2231 | alcohol-acetaldehyde dehydrogenase |
| aldB | 1253 | alpha-acetolactate decarboxylase |
| aldC | 1117 | alpha-acetolactate decarboxylase |
| als | 1201 | alpha-acetolactate synthase |
| butA | 919 | acetoin reductase |
| butB | 918 | 2,3-butanediol dehydrogenase |
| frdC | 1139 | fumarate reductase flavoprotein subunit |
| mae | 1204 | malate oxidoreductase |
| mleS | 923 | malolactic enzyme |
| pfl | 659 | pyruvate-formate lyase |
| pflA | 1881 | pyruvate-formate lyase activating enzyme |
| pta | 1709 | phosphate acetyltransferase |
| yseE | 1846 | 2-nitropropane deoxygenase |
| Gluconeogenesis | ||
| fbp | 255 | fructose-1,6-bisphosphatase |
| Glycolysis | ||
| enoA | 634 | enolase |
| enoB | 275 | 2-phosphoglycerate dehydratase |
| fbaA | 1980 | fructose-bisphosphate aldolase |
| gapA | 554 | glyceraldehyde 3-phosphate dehydrogenase |
| gapB | 2333 | glyceraldehyde 3-phosphate dehydrogenase |
| ldh | 1370 | L-lactate dehydrogenase |
| ldhB | 380 | L-lactate dehydrogenase |
| ldhX | 1143 | L-lactate dehydrogenase |
| pfk | 1372 | 6-phosphofructokinase |
| pgiA | 2245 | glucose-6-phosphate isomerase A |
| pgk | 243 | phosphoglycerate kinase |
| pgmB | 442 | beta-phosphoglucomutase |
| pmg | 335 | phosphoglycerate mutase |
| pycA | 665 | pyruvate carboxylase |
| pyk | 1371 | pyruvate kinase |
| tpiA | 1149 | triosephosphate isomerase |
| yjhF | 975 | phosphoglycerate mutase |
| yrjI | 1800 | phosphoglycerate mutase |
| Pentose phosphate pathway | ||
| dxsA | 1510 | 1-deoxyxylulose-5-phosphate synthase |
| dxsB | 1725 | 1-deoxyxylulose-5-phosphate synthase |
| gnd | 609 | decarboxylating 6-phosphogluconate dehydrogenase |
| ptk | 1540 | phosphoketolase |
| rpe | 2004 | ribulose-phosphate 3-epimerase |
| rpiA | 2317 | ribose 5-phosphate isomerase A |
| tkt | 1670 | transketolase |
| zwf | 2302 | glucose-6-phosphate 1-dehydrogenase |
| Pyruvate dehydrogenase | ||
| pdhA | 64 | PDH E1 component alpha subunit |
| pdhB | 63 | PDH E1 component beta subunit |
| pdhC | 61 | dihydrolipoamide acetyltransferase component of PDH complex |
| pdhD | 60 | lipoamide dehydrogenase component of PDH complex |
| Sugars | ||
| bglA | 423 | phospho-beta-glucosidase |
| bglH | 1490 | beta-glucosidase |
| bglS | 180 | beta-glucosidase A |
| galE | 2055 | UDP-glucose 4-epimerase |
| galK | 2061 | galactokinase |
| galM | 2062 | aldose 1-epimerase |
| galT | 2060 | galactose-1-phosphate uridylyltransferase |
| glk | 2101 | glucose kinase |
| gntK | 2269 | gluconate kinase |
| gntZ | 2271 | 6-phosphogluconate dehydrogenase |
| lacC | 985 | tagatose-6-phosphate kinase |
| lacZ | 2057 | beta-galactosidase |
| maa | 1735 | maltose O-acetyltransferase |
| malQ | 695 | 4-alpha-glucanotransferase |
| mtlD | 34 | mannitol 1-phosphate 5-dehydrogenase |
| pmi | 780 | mannose-6-phosphate isomerase |
| rbsK | 1687 | ribokinase |
| scrK | 1518 | fructokinase |
| thgA | 2058 | thiogalactoside acetyltransferase |
| uxaC | 1674 | glucuronate isomerase |
| uxuA | 1678 | D-mannonate dehydratase |
| uxuB | 1679 | fructuronate reductase |
| xylA | 1550 | xylose isomerase |
| xylB | 1548 | xylulose kinase |
| xylM | 1547 | aldose 1-epimerase |
| xylX | 1543 | acetyltransferase hypothetical protein |
| xynB | 1544 | beta-1,4-xylosidase |
| yeeB | 443 | sugar hydrolase |
| ygjD | 694 | 4-alpha-glucanotransferase |
| yidC | 834 | beta-glucosidase |
| yncA | 1321 | acetyltransferase |
| ypbG | 1519 | sugar kinase |
| ypcA | 1521 | beta-glucosidase |
| ypdB | 1532 | sugar hydrolase |
| ypdD | 1537 | sugar hydrolase |
| yrcA | 1722 | phospho-beta-glucosidase |
| TCA cycle | ||
| citB | 670 | aconitate hydratase |
| citC | 1207 | acetate-SH-citrate lyase ligase |
| citD | 1208 | citrate lyase acyl-carrier protein |
| citE | 1209 | citrate lyase beta chain |
| citF | 1210 | citrate lyase alpha chain |
| citG | 1211 | CitG protein |
| icd | 672 | isocitrate dehydrogenase |
| FATTY ACID AND PHOSPHOLIPID METABOLISM | ||
| General | ||
| accA | 790 | acetyl-CoA carboxylase carboxyl transferase subunit alpha |
| accB | 786 | biotin carboxyl carrier protein of acetyl-CoA carboxylase |
| accC | 788 | biotin carboxylase |
| accD | 789 | acetyl-CoA carboxylase carboxyl transferase subunit betta |
| acpA | 782 | acyl carrier protein |
| acpD | 116 | acyl carrier protein phosphodiesterase |
| acpS | 862 | acyl carrier protein synthase |
| cfa | 1972 | cyclopropane fatty acid synthase |
| fabD | 783 | malonyl CoA-acyl carrier protein transacylase |
| fabF | 785 | 3-oxoacyl-acyl carrier protein synthase II |
| fabG1 | 784 | 3-oxoacyl-acyl carrier protein reductase |
| fabG2 | 1845 | 3-oxoacyl-acyl carrier protein reductase |
| fabH | 782 | 3-oxoacyl-acyl-carrier-protein synthase III |
| fabI | 562 | NADH-dependent enoyl-ACP reductase |
| fabZ1 | 561 | hydroxymyristoyl-acyl carrier protein dehydratase |
| fabZ2 | 787 | 3R-hydroxymyristoyl-acyl carrier protein dehydratase |
| fadA | 1843 | acetyl coenzyme A acetyltransferase |
| fadD | 655 | long-chain acyl-CoA synthetase |
| hmcM | 1614 | hydroxymethylglutaryl-CoA synthase |
| lplL | 65 | lipoate-protein ligase |
| plsX | 72 | fatty acid/phospholipid synthesis protein |
| thiL | 1613 | acetyl coenzyme A acetyltransferase |
| ydiD | 386 | acyl carrier protein phosphodiesterase |
| yeaG | 408 | mevalonate kinase |
| yeaH | 410 | diphosphomevalonate decarboxylase |
| yebA | 411 | mevalonate kinase |
| yscE | 1830 | lipase |
| PURINES, PYRIMIDINES, NUCLEOSIDES AND NUCLEOTIDES | ||
| 2'-deoxyribonucleotide metabolism | ||
| dcdA | 1156 | dCMP deaminase |
| nrdE | 1004 | ribonucleoside-diphosphate reductase alpha chain |
| nrdF | 1002 | ribonucleoside-diphosphate reductase beta chain |
| Nucleotide and nucleoside interconversions | ||
| cmk | 1761 | cytidine monophosphate kinase |
| dukA | 494 | deoxynucleoside kinase |
| dukB | 1171 | deoxynucleoside kinase |
| nucA | 1101 | nucleotidase |
| pyrH | 2088 | UMP-kinase |
| ycjM | 301 | phosphatase |
| Purine ribonucleotide biosynthesis | ||
| guaA | 1517 | GMP synthase |
| guaB | 222 | IMP dehydrogenase |
| guaC | 1159 | GMP reductase |
| hprT | 1561 | hypoxanthine-guanine phosphoribosyltransferase |
| purA | 2029 | adenylosuccinate synthase |
| purB | 1689 | adenylosuccinate lyase |
| purC | 1578 | phosphoribosylaminoimidazole-succinocarboxamide synthetase |
| purD | 1554 | phosphoribosylamine-glycine ligase |
| purE | 1553 | phosphoribosylaminoimidazole carboxylase |
| purF | 1572 | phosphoribosylpyrophosphate amidotransferase |
| purH | 1560 | bifunctional purine biosynthesis protein PurH |
| purK | 1552 | phosphoribosylaminoimidazole carboxylase |
| purL | 1575 | phosphoribosyl formylglycinamidine synthase II |
| purM | 1566 | phosphoribosyl-aminoimidazole synthetase |
| purN | 1565 | phosphoribosylglycinamide formyltransferase |
| purQ | 1577 | phosphoribosyl formylglycinamidine synttase I |
| Pyrimidine ribonucleotide biosynthesis | ||
| carA | 1645 | glutaminase of carbamoyl-phosphate synthase |
| carB | 1400 | carbamoylphosphate synthetase |
| dut | 181 | deoxyuridine 5'-triphosphate nucleotidhydrolase |
| pydA | 1593 | dihydroorotate dehydrogenase A |
| pydB | 1383 | dihydroorotate dehydrogenase B |
| pyrB | 1646 | aspartate carbamoyltransferase |
| pyrC | 1082 | dihydroorotase |
| pyrE | 1081 | orotate phosphoribosyltransferase |
| pyrF | 1382 | orotidine-phosphate decarboxylase |
| pyrZ | 1384 | dihydroorotate dehydrogenase electron transfer subunit |
| thyA | 1583 | thymidylate synthase |
| yeaB | 404 | thymidylate kinase |
| Salvage of nucleosides and nucleotides | ||
| add | 288 | adenosine deaminase |
| adk | 2158 | adenylate kinase |
| apt | 623 | adenine phosphoribosyltransferase |
| cdd | 1463 | cytidine deaminase |
| deoB | 956 | phosphopentomutase |
| deoC | 1464 | deoxyribose-phosphate aldolase |
| deoD | 957 | purine nucleoside phosphorylase |
| gmk | 1967 | guanylate kinase |
| hpt | 25 | hypoxantine-guanine phosphorybosyltransferase |
| nrdD | 272 | anaerobic ribonucleoside-triphosphate reductase |
| nrdG | 273 | anaerobic ribonucleoside-triphosphate reductase activating protein |
| pdp | 1465 | pyrimidine-nucleoside phosphorylase |
| prsA | 826 | ribose-phosphate pyrophosphokinase |
| prsB | 1926 | ribose-phosphate pyrophosphokinase |
| udk | 1710 | uridine kinase |
| udp | 855 | uridine phosphorylase |
| upp | 1992 | uracil phosphoribosyltransferase |
| xpt | 1160 | xanthine phosphoribosyltransferase |
| yfiG | 585 | thymidine kinase |
| Sugar-nucleotide biosynthesis and interconversions | ||
| cpsM | 199 | dTDP-4-keto-6-deoxyglucose-3,5-epimerase |
| rmlA | 197 | glucose-1-phosphate thymidylyltransferase |
| rmlB | 200 | dTDP-glucose 4,6-dehydratase |
| rmlC | 201 | dTDP-L-rhamnose synthase |
| REGULATORY FUNCTIONS | ||
| General | ||
| ahrC | 883 | transcriptional regulator |
| aldR | 1253 | regulatory protein AldR |
| argR | 2118 | arginine catabolic regulator |
| birA1 | 1840 | bifunctional protein BirA |
| birA2 | 1973 | bifunctional protein BirA |
| codY | 164 | transcriptional regulator |
| codZ | 1865 | transcriptional regulator |
| copR | 845 | transcriptional regulator |
| fur | 1506 | ferric uptake regulator |
| gadR | 1327 | positive regulator |
| glnB | 1636 | nitrogen regulatory protein P-II |
| glnR | 2284 | glutamine synthetase repressor |
| gntR | 2272 | transcription regulator |
| nadR | 2067 | transcriptional regulator |
| phoU | 1771 | phosphate transport system regulator |
| purR | 2351 | regulator of purine biosynthetic genes |
| pyrR | 1648 | pyrimidine operon regulator |
| rarA | 1649 | transcriptional regulator |
| rcfA | 2083 | transcriptional regulator |
| rcfB | 2318 | transcriptional regulator |
| relA | 108 | ppGpp synthetase I |
| rmeA | 1947 | transcriptional regulator |
| rmeB | 1508 | transcriptional regulator |
| rmeC | 237 | transcriptional regulator |
| rmeD | 2053 | transcriptional regulator |
| tagR | 936 | transcriptional regulator |
| tenA | 1839 | transcriptional regulator TenA |
| yabA | 11 | transcriptional regulator |
| yabB | 13 | transcriptional regulator |
| ybdA | 131 | transcription regulator |
| ybdG | 135 | transcriptional regulator |
| ybeD | 146 | transcriptional regulator |
| ycdF | 235 | transcriptional regulator |
| ycfA | 250 | transcriptional regulator |
| ydbF | 316 | transcriptional regulator |
| ydcG | 327 | transcriptional regulator |
| yebF | 418 | transcriptional regulator |
| yecA | 420 | transcriptional regulator |
| yecE | 427 | transcriptional regulator |
| yeeG | 446 | transcriptional regulator |
| yfbM | 518 | transcriptional regulator |
| yfeA | 548 | transcription regulator |
| yfjG | 600 | transcriptional regulator |
| ygfC | 654 | transcriptional regulator |
| yhgC | 763 | transcriptional regulator |
| yidA | 831 | transcription regulator |
| yjaD | 904 | transcriptional regulator |
| yjaJ | 910 | transcriptional regulator |
| yjfE | 955 | transcription regulator |
| yjjB | 992 | transcriptional regulator |
| ykhI | 1078 | transcriptional regulator |
| yleF | 1148 | transcription regulator |
| yliA | 1180 | positive transcriptional regulator |
| yljC | 1193 | transcriptional regulator |
| ymcE | 1223 | transcriptional regulator |
| ymiA | 1285 | metalloregulator |
| ynaB | 1303 | transcriptional regulator |
| yogL | 1469 | transcriptional regulator |
| yohC | 1472 | transcriptional regulator |
| ypfD | 1555 | transcriptional regulator |
| ypgC | 1563 | transcription regulator |
| yqbH | 1618 | transcriptional regulator |
| yrbI | 1717 | transcriptional regulator |
| yrfA | 1750 | transcription regulator |
| yrfE | 1760 | transcription regulator |
| ysfD | 1854 | regulatory protein |
| ysfG | 1857 | transcriptional regulator |
| ysgA | 1866 | transcriptional regulator |
| yugA | 2065 | transcription regulator |
| ywdE | 2237 | transcription regulator |
| ywiI | 228 | transcriptional regulator |
| ywjD | 2297 | transcription regulator |
| yxcB | 2326 | transcriptional regulator |
| yxdD | 2337 | transcriptional regulator |
| Two-component systems | ||
| kinA | 1638 | sensor protein kinase |
| kinB | 1460 | sensor protein kinase |
| kinC | 402 | sensor protein kinase |
| kinD | 912 | sensor protein kinase |
| kinE | 1032 | sensor protein kinase |
| kinF | 1726 | sensor protein kinase |
| kinG | 1804 | sensor protein kinase |
| llrA | 1639 | two-component system regulator |
| llrB | 1458 | two-component system regulator |
| llrC | 403 | two-component system regulator |
| llrD | 913 | two-component system regulator |
| llrE | 1031 | two-component system regulator |
| llrF | 1727 | two-component system regulator |
| llrG | 1805 | two-component system regulator |
| llrH | 1758 | two-component system regulator |
| LacI-family regulators | ||
| ccpA | 1696 | catabolite control protein A |
| rbsR | 1688 | ribose operon repressor |
| rliA | 1728 | transcriptional regulator |
| rliB | 1536 | transcriptional regulator |
| rliC | 731 | transcriptional regulator |
| rliDA | 2215 | transcriptional regulator |
| rliDB | 2218 | transcriptional regulator |
| LysR-family regulators | ||
| fhuR | 331 | fhu operon transcriptional regulator |
| mleR | 896 | malolactic fermentation system transcriptional activator |
| mtlR | 32 | transcriptional regulator |
| rlrA | 1264 | transcriptional regulator |
| rlrB | 1946 | transcriptional regulator |
| rlrC | 1341 | transcriptional regulator |
| rlrD | 381 | transcriptional regulator |
| rlrE | 1598 | transcriptional regulator |
| rlrG | 378 | transcriptional regulator |
| AraC-family regulators | ||
| adaA | 519 | methylphosphotriester-DNA alkyltransferase |
| xylR | 1551 | xylose operon regulator |
| yneE | 1344 | transcriptional regulator |
| GntR-family regulators | ||
| busR | 1476 | transcriptional regulator |
| kdgR | 1680 | transcriptional regulator |
| rgrA | 437 | transcriptional regulator |
| rgrB | 1461 | transcriptional regulator |
| DeoR-family regulators | ||
| citR | 1206 | citrate lyase regulator |
| lacR | 984 | lactose transport regulator |
| rdrA | 797 | transcriptional regulator |
| rdrB | 1332 | transcriptional regulator |
| MarR-family regulators | ||
| rmaA | 750 | transcriptional regulator |
| rmaB | 715 | transcriptional regulator |
| rmaC | 1503 | transcriptional regulator |
| rmaD | 115 | transcriptional regulator |
| rmaE | 1511 | transcriptional regulator |
| rmaF | 1341 | transcriptional regulator |
| rmaG | 781 | transcriptional regulator |
| rmaH | 932 | transcriptional regulator |
| rmaI | 1583 | transcriptional regulator |
| rmaJ | 584 | transcriptional regulator |
| zitR | 2185 | zinc transport transcriptional regulator |
| BglG-family regulators | ||
| bglR | 1493 | beta-glucoside operon antiterminator |
| GTP-binding proteins | ||
| eraL | 355 | GTP-binding protein Era |
| hflX | 225 | GTP-binding protein HflX |
| obgL | 1630 | GTP-binding protein Obg |
| thdF | 2328 | GTP-binding protein ThdF |
| typA | 2094 | GTP-binding protein TypA/BipA |
| ylqL | 1330 | GTP-binding protein |
| yphL | 762 | GTP-binding protein |
| yqeL | 224 | GTP-binding protein |
| ysxL | 1165 | GTP-binding protein |
| yyaL | 12 | GTP-binding protein |
| REPLICATION | ||
| Degradation of DNA | ||
| exoA | 799 | exodeoxyribonuclease A |
| nth | 1084 | endonuclease III |
| recJ | 622 | single-stranded DNA specific exonuclease |
| rexA | 8 | subunit A of ATP-dependent exonuclease |
| rexB | 5 | subunit B of ATP-dependent exonuclease |
| sbcC | 1354 | ATP-dependent dsDNA exonuclease |
| sbcD | 1357 | exonuclease SbcD |
| uvrA | 1887 | excinuclease ABC subunit A |
| uvrB | 557 | excinuclease ABC subunit B |
| uvrC | 857 | excinuclease ABC subunit C |
| xseA | 878 | exonuclease VII large subunit |
| xseB | 879 | exonuclease VII small subunit |
| DNA replication, restriction, modification, recombination, and repair | ||
| cshA | 100 | chromosome segregation helicase |
| dinG | 1900 | ATP-dependent helicase DinG |
| dnaA | 1 | replication initiation protein DnaA |
| dnaB | 758 | replication protein DnaB |
| dnaC | 754 | replicative DNA helicase |
| dnaD | 1083 | DNA replication protein DnaD |
| dnaE | 496 | DNA polymerase III, alpha chain 2 |
| dnaG | 545 | DNA primase |
| dnaH | 2279 | DNA polymerase III, subunits beta and tau |
| dnaI | 759 | primosomal protein DnaI |
| dnaJ | 2308 | DnaJ protein |
| dnaN | 2 | DNA polymerase III, beta chain |
| dnaQ | 1010 | DNA polymerase III, epsilon chain |
| gyrA | 1123 | DNA gyrase subunit A |
| gyrB | 929 | DNA gyrase subunit B |
| hexA | 2294 | mismatch repair protein MutS |
| hexB | 2291 | DNA mismatch repair protein MutL |
| holB | 405 | DNA polymerase III, delta' subunit |
| hsdM | 645 | type I restriction enzyme M protein |
| hsdR | 642 | type I restriction enzyme R protein |
| hsdS | 646 | type I restriction enzyme specificity protein |
| hslA | 502 | HU like DNA-binding protein |
| hslB | 903 | HU-like DNA-binding protein |
| ligA | 425 | DNA ligase |
| mutM | 358 | formamidopyrimidine-DNA glycosylase |
| mutS | 1693 | DNA mismatch repair protein MutS |
| mutX | 1136 | mutator protein MutT |
| mutY | 859 | A/G-specific adenine glycosylase |
| ogt | 519 | 6-O-methylguanine-DNA methyltransferase |
| parC | 1012 | topoisomerase IV subunit B |
| parE | 1008 | topoisomerase IV subunit B |
| pcrA | 1135 | ATP-dependent helicase PcrA |
| polA | 2212 | DNA polymerase I |
| polC | 2192 | DNA polymerase III, alpha chain |
| priA | 1965 | primosomal protein N' |
| radC | 1036 | DNA repair protein RadC |
| recA | 359 | RecA protein |
| recD | 1798 | exodeoxyribonuclease V alpha chain |
| recF | 2052 | RecF protein |
| recG | 2331 | ATP-dependent DNA helicase RecG |
| recM | 340 | RecM protein |
| recN | 884 | DNA repair protein RecN |
| ruvA | 2290 | DNA helicase RuvA |
| ruvB | 2289 | DNA helicase RuvB |
| snf | 2122 | SWI/SNF family helicase |
| ssbA | 398 | single-strand binding protein |
| ssbB | 2274 | single-strand binding protein |
| tag | 1137 | DNA-3-methyladenine glycosidase I |
| topA | 1256 | DNA topoisomerase I |
| umuC | 581 | SOS responce UmuC protein |
| ung | 233 | uracil-DNA glycosilase |
| xerD | 635 | integrase-recombinase |
| ybaH | 101 | acetyl transferase |
| yffD | 556 | diadenosine 5',5”'-P1,P4-tetraphosphate hydrolase |
| ymgA | 1260 | integrase-recombinase |
| TRANSCRIPTION | ||
| Degradation of RNA | ||
| pnpA | 1923 | polyribonucleotide nucleotidyltransferase |
| rnc | 810 | ribonuclease III |
| rnhA | 2350 | ribonuclease HII |
| rnhB | 1329 | ribonuclease HII |
| vacB1 | 968 | ribonuclease |
| vacB2 | 1227 | ribonuclease |
| RNA synthesis, modification, and DNA transcription | ||
| greA | 626 | transcription elongation factor GreA |
| mfd | 19 | transcription-repair coupling factor |
| nusA | 774 | transcription termination protein NusA |
| nusB | 693 | transcription termination protein NusB |
| nusG | 2174 | transcription antitermination protein |
| papL | 1603 | poly(A) polymerase |
| queA | 1617 | S-adenosylmethionine tRNA ribosyltransferase |
| rluA | 2182 | pseudouridine synthase |
| rluB | 1308 | pseudouridine synthase |
| rluC | 1390 | pseudouridine synthase |
| rluD | 1027 | pseudouridine synthase |
| rluE | 368 | pseudouridine synthase |
| rpoA | 2153 | DNA-directed RNA polymerase alpha chain |
| rpoB | 1863 | DNA-directed RNA polymerase beta chain |
| rpoC | 1859 | DNA-directed RNA polymerase beta' chain |
| rpoD | 547 | major RNA polymerase sigma factor |
| rpoE | 624 | DNA-directed RNA polymerase delta chain |
| rrmA | 1365 | rRNA methyltransferase |
| rsuA | 2327 | ribosomal small subunit pseudouridine synthase A |
| sigX | 2243 | RNA polymerase ECF sigma factor |
| smpB | 1777 | tmRNA-binding protein SmpB |
| sunL | 1958 | rRNA methylase |
| trmD | 1607 | tRNA methyltransferase |
| yfjD | 597 | tRNA/rRNA methyltransferase |
| RNA processing | ||
| rheA | 354 | ATP-dependent RNA helicase |
| rheB | 416 | ATP-dependent RNA helicase |
| rimM | 1607 | 16S rRNA processing protein |
| TRANSLATION | ||
| Amino acyl tRNA synthetases | ||
| alaS | 1780 | alanyl-tRNA synthetase |
| argS | 2117 | arginyl-tRNA synthetase |
| asnS | 1896 | asparaginyl-tRNA synthetase |
| aspS | 2041 | aspartyl-tRNA synthetase |
| cysS | 1919 | cysteinyl-tRNA synthetase |
| gltX | 2141 | glutamyl-tRNA synthetase |
| glyS | 1102 | glycyl-tRNA synthetase alpha chain |
| glyT | 1104 | glycyl-tRNA synthetase beta chain |
| hisS | 2043 | histidyl-tRNA synthetase |
| ileS | 1933 | isoleucyl-tRNA synthetase |
| leuS | 829 | leucyl-tRNA synthetase |
| lysS | 377 | lysyl-tRNA synthetase |
| metS | 800 | methyonyl-tRNA synthetase |
| pheS | 2010 | phenylalanil-tRNA synthetase alpha chain |
| pheT | 2008 | phenylalanyl-tRNA synthetase beta chain |
| proS | 2197 | prolyl-tRNA synthetase |
| serS | 1768 | seryl-tRNA synthetase |
| thrS | 1988 | theronyl-tRNA synthetase |
| trpS | 68 | tryptophanyl-tRNA synthetase |
| tyrS | 391 | tyrosyl-tRNA synthetase 1 |
| valS | 2250 | valyl-tRNA synthetase |
| Degradation of proteins, peptides, and glycopeptides | ||
| gcp | 294 | O-sialoglycoprotein endopeptidase |
| htrA | 2205 | exported serine protease |
| pepA | 394 | glutamyl aminopeptidase |
| pepC | 1948 | aminopeptidase C |
| pepDA | 249 | dipeptidase |
| pepDB | 1601 | dipeptidase |
| pepF | 1784 | oligoendopeptidase F |
| pepM | 601 | mathionine aminopeptidase |
| pepN | 304 | aminopeptidase N |
| pepO | 1867 | neutral endopeptidase |
| pepP | 691 | aminopeptidase P |
| pepQ | 1698 | proline dipeptidase |
| pepT | 1878 | tripeptidase |
| pepV | 861 | dipeptidase |
| pepXP | 2136 | X-prolyl dipeptidyl aminopeptidase |
| yueE | 2049 | protease |
| yueF | 2050 | protease |
| yugD | 2069 | protease |
| yuhB | 2071 | protease |
| Protein modification | ||
| def | 555 | polypeptide deformylase |
| pknB | 1956 | serine/threonine protein kinase |
| pmpA | 1782 | protein maturation protein |
| pmsR | 2085 | peptide methionine sulfoxide reductase |
| pmsX | 1594 | peptide methionine sulfoxide reductase |
| ppiA | 369 | peptidyl-prolyl cis-trans isomerase |
| ppiB | 914 | peptidyl-prolyl cis-trans isomerase |
| pppL | 1957 | protein serine/threonine phosphatase |
| ptpL | 2284 | protein-tyrosine phosphatase |
| ytaD | 1905 | protein-tyrosine phosphatase |
| Ribosomal proteins: synthesis and modification | ||
| prmA | 105 | methyltransferase |
| rplA | 2079 | 50S ribosomal protein L1 |
| rplB | 2168 | 50S ribosomal protein L2 |
| rplC | 2170 | 50S ribosomal protein L3 |
| rplD | 2169 | 50S ribosomal protein L4 |
| rplE | 2164 | 50S ribosomal protein L5 |
| rplF | 2162 | 50S ribosomal protein L6 |
| rplI | 753 | 50S ribosomal protein L9 |
| rplJ | 1302 | 50S ribosomal protein L10 |
| rplK | 2080 | 50S ribosomal protein L11 |
| rplL | 1301 | 50S ribosomal protein L7/L12 |
| rplM | 2347 | 50S ribosomal protein L13 |
| rplN | 2165 | 50S ribosomal protein L14 |
| rplO | 2160 | 50S ribosomal protein L15 |
| rplP | 2166 | 50S ribosomal protein L16 |
| rplQ | 2152 | 50S ribosomal protein L17 |
| rplR | 2161 | 50S ribosomal protein L18 |
| rplS | 898 | 50S ribosomal protein L19 |
| rplT | 1911 | 50S ribosomal protein L20 |
| rplU | 1091 | 50S ribosomal protein L21 |
| rplV | 2167 | 50S ribosomal protein L22 |
| rplW | 2169 | 50S ribosomal protein L23 |
| rplX | 2165 | 50S ribosomal protein L24 |
| rpmA | 1091 | 50S ribosomal protein L27 |
| rpmB | 196 | 50S ribosomal protein L28 |
| rpmC | 2166 | 50S ribosomal protein L29 |
| rpmD | 2160 | 50S ribosomal protein L30 |
| rpmE | 1640 | 50S ribosomal protein L31 |
| rpmF | 96 | 50S ribosomal protein L32 |
| rpmGA | 662 | 50S ribosomal protein L33 |
| rpmGB | 96 | 50S ribosomal protein L33 |
| rpmGC | 2175 | 50S ribosomal protein L33 |
| rpmH | 134 | 50S ribosomal protein L34 |
| rpmI | 1912 | 50S ribosomal protein L35 |
| rpmJ | 2154 | 50S ribosomal protein L36 |
| rpsA | 854 | 30S ribosomal protein S1 |
| rpsB | 2228 | 30S ribosomal protein S2 |
| rpsC | 2166 | 30S ribosomal protein S3 |
| rpsD | 284 | 30S ribosomal protein S4 |
| rpsE | 2161 | 30S ribosomal protein S5 |
| rpsF | 2275 | 30S ribosomal protein S6 |
| rpsG | 2355 | 30S ribosomal protein S7 |
| rpsH | 2162 | 30S ribosomal protein S8 |
| rpsI | 2347 | 30S ribosomal protein S9 |
| rpsJ | 2170 | 30S ribosomal protein S10 |
| rpsK | 2153 | 30S ribosomal protein S11 |
| rpsL | 2355 | 30S ribosomal protein S12 |
| rpsM | 2154 | 30S ribosomal protein S13 |
| rpsN | 2164 | 30S ribosomal protein S14 |
| rpsN2 | 911 | 30S ribosomal protein S14 |
| rpsO | 1955 | 30S ribosomal protein S15 |
| rpsP | 1611 | 30S ribosomal protein S16 |
| rpsQ | 2165 | 30S ribosomal protein S17 |
| rpsR | 2274 | 30S ribosomal protein S18 |
| rpsS | 2167 | 30S ribosomal protein S19 |
| rpsT | 1797 | 30S ribosomal protein S20 |
| rpsU | 237 | 30S ribosomal protein S21 |
| ycjC | 293 | acetyltransferase |
| ycjD | 293 | acetyltransferase |
| yhdC | 740 | acetyl transferase |
| yhjG | 798 | acetyl transferase |
| ylxQ | 776 | probable ribosomal protein |
| fmt | 1962 | methyonyl-tRNA formyltransferase |
| gatA | 166 | Glu-tRNA amidotransferase subunit A |
| gatB | 168 | Glu-tRNA amidotransferase subunit B |
| gatC | 165 | Glu-tRNA amidotransferase subunit C |
| ksgA | 690 | kasugamycin dimethyltransferase |
| miaA | 615 | tRNA isopentenyltransferase |
| pth | 17 | peptidyl-tRNA hydrolase |
| rnpA | 132 | ribonuclease P protein component |
| tgt | 156 | queuine tRNA-ribosyltransferase |
| trmH | 1942 | tRNA-guanosine methyltransferase |
| trmU | 853 | tRNA-methyltransferase |
| truA | 485 | tRNA pseudouridine synthase A |
| truB | 1141 | tRNA pseudouridine synthase B |
| Translation factors | ||
| efp | 692 | elongation factor P |
| frr | 2087 | ribosome recycling factor |
| fusA | 2353 | elongation factor G |
| infA | 2154 | translation initiation factor IF-1 |
| infB | 777 | translation initiation factor IF-2 |
| infC | 1912 | translation initiation factor IF-3 |
| lepA | 1118 | GTP-binding protein LepA |
| prfA | 586 | peptide chain release factor 1 |
| prfB | 999 | peptide chain release factor 2 |
| prfC | 352 | peptide chain release factor 3 |
| rbfA | 779 | ribosome-binding factor A |
| tsf | 2227 | elongation factor Ts |
| tuf | 1930 | elongation factor Tu |
| TRANSPORT AND BINDING PROTEINS | ||
| General | ||
| ecsA | 2075 | ABC transporter ATP binding protein |
| ecsB | 2074 | ABC transporter permease protein |
| mscL | 2171 | large conductance mechanosensitive channel protein |
| yabE | 16 | ABC transporter ATP-binding protein |
| yahG | 74 | ABC transporter ATP binding protein |
| yaiE | 87 | transporter |
| yajA | 90 | transporter |
| ybaB | 102 | ABC transporter ATP binding protein |
| ycfB | 251 | ABC transporter ATP binding protein |
| ycfC | 252 | ABC transporter permease protein |
| ycfI | 260 | ABC transporter ATP binding protein |
| ycgA | 261 | ABC transporter ATP binding protein |
| ycgB | 262 | ABC transporter ATP binding protein |
| ychD | 276 | ABC transporter ATP-binding protein |
| ychE | 277 | ABC transporter ATP-binding protein |
| ychF | 278 | ABC transporter permease protein |
| ydaG | 310 | ABC transporter ATP binding and permease protein |
| ydbA | 312 | ABC transporter ATP binding and permease protein |
| ydcE | 325 | ABC transporter ATP binding protein |
| ydcF | 326 | ABC transporter permease protein |
| ydiA | 382 | permease |
| yfcA | 520 | ABC transporter ATP binding protein |
| yfcB | 521 | ABC transporter permease protein |
| yfgE | 563 | ABC transporter ATP binding protein |
| yfgF | 564 | ABC transporter permease protein |
| ygfA | 652 | ABC transporter ATP-binding protein |
| ygfB | 653 | ABC transporter permease protein |
| yhcA | 721 | ABC transporter ATP-binding and permease protein |
| yiiF | 886 | transporter |
| yijC | 894 | ABC transporter permease protein |
| yijD | 895 | ABC transporter ATP binding protein |
| yjcA | 921 | ABC transporter ATP binding protein |
| yjjC | 993 | ABC transporter ATP-binding protein |
| yjjD | 994 | ABC transporter permease protein |
| yjjF | 996 | transporter |
| ykhF | 1074 | ABC transporter ATP binding protein |
| ylbA | 1111 | ABC transporter ATP-binding protein |
| ylbB | 1113 | ABC transporter permease protein |
| yljI | 1199 | permease |
| ymeB | 1245 | ABC transporter ATP binding protein |
| ynaC | 1304 | ABC transporter ABC binding and permease protein |
| ynaD | 1306 | ABC transporter ABC binding and permease protein |
| yngB | 1364 | fibronectin-binding protein |
| ypgD | 1564 | ABC transporter ATP binding and permease protein |
| ypjG | 1597 | ABC transporter ATP binding protein |
| yrjE | 1794 | transport permease |
| ysaB | 1808 | ABC transporter permease and substrate binding protein |
| ysaC | 1809 | ABC transporter ATP-binding protein |
| ysdA | 1834 | ABC transporter permease protein |
| ysdB | 1835 | ABC transporter ATP binding protein |
| ysfB | 1852 | ABC transporter ATP-binding protein |
| ysiA | 1882 | transport protein |
| ysiB | 1883 | permease |
| ytaB | 1902 | transport protein |
| yteD | 1945 | transmembrane efflux protein |
| yudA | 2031 | transport protein |
| yujD | 2097 | ABC transporter ATP binding protein |
| ywiG | 2285 | ABC transporter ATP binding protein |
| ywiH | 2286 | ABC transporter permease protein |
| yxaA | 2300 | permease |
| yxdG | 2340 | transporter |
| yxeB | 2349 | ABC transporter ATP-binding protein |
| yxfA | 2358 | transporter |
| Amino acids, peptides and amines | ||
| arcD1 | 2112 | arginine/ornitine antiporter |
| arcD2 | 2107 | arginine/ornitine antiporter |
| brnQ | 685 | branched chain amino acid permease |
| busAA | 1475 | betaine ABC transporter ATP binding protein |
| busAB | 1474 | betaine ABC transporter permease and substrate binding protein |
| choQ | 865 | choline ABC transporter ATP binding protein |
| choS | 867 | choline ABC transporter permease and substrate binding protein |
| ctrA | 113 | cationic amino acid transporter |
| dtpT | 705 | di-/tripeptide transporter |
| gadC | 1326 | glutamate-gamma-aminobutyrate antiporter |
| glnP | 1818 | glutamine ABC transporter permease and substrate binding protein |
| glnQ | 1819 | glutamine ABC transporter ATP-binding protein |
| gltP | 1856 | glutamate ABC transporter permease protein |
| gltQ | 1855 | glutamate ABC transporter ATP-binding protein |
| gltS | 559 | glutamate or arginine ABC transporter substrate binding protein |
| lysP | 2277 | lysine specific permease |
| lysQ | 370 | lysine specific permease |
| oppA | 1906 | oligopeptide ABC trasporter substrate binding protein |
| oppB | 1908 | oligopeptide ABC trasporter permease protein |
| oppC | 1907 | oligopeptide ABC trasporter permease protein |
| oppD | 1910 | oligopeptide ABC trasporter ATP binding protein |
| oppF | 1909 | oligopeptide ABC trasporter ATP binding protein |
| optA | 346 | oligopeptide ABC transporter substrate binding protein |
| optB | 347 | oligopeptide ABC trasporter permease protein |
| optC | 348 | oligopeptide ABC trasporter permease protein |
| optD | 349 | oligopeptide ABC trasporter ATP binding protein |
| optF | 350 | oligopeptide ABC trasporter ATP binding protein |
| optS | 344 | oligopeptide ABC transporter substrate binding protein |
| potA | 1176 | spermidine/putrescine ABC transporter ATP-binding protein |
| potB | 1177 | spermidine/putrescine ABC transporter permease protein |
| potC | 1178 | spermidine/putrescine ABC transporter permease protein |
| potD | 1179 | spermidine/putrescine ABC transporter substrate binding protein |
| yagE | 70 | amino acid permease |
| ydcB | 322 | amino acid ABC transporter ATP binding protein |
| ydcC | 323 | amino acid ABC trasporter permease protein |
| ydgB | 361 | amino acid permease |
| ydgC | 362 | amino acid permease |
| yfcG | 525 | peptide-binding protein |
| yibG | 819 | amino acid permease |
| yjgC | 963 | amino acid ABC transporter substrate binding protein |
| yjgD | 964 | amino acid ABC transporter permease protein |
| yjgE | 965 | amino acid ABC transporter ATP binding protein |
| ylcA | 1121 | amino acid permease |
| yqfD | 1655 | amino acid permease |
| yrfD | 1756 | amino acid antiporter |
| yshA | 1876 | amino acid permease |
| ysjA | 1891 | amino acid permease |
| yvdF | 2138 | amino acid ABC transporter substrate binding protein |
| Anions | ||
| phnA | 2332 | alkylphosphonate uptake protein |
| phnB | 299 | phosphonate ABC transporter permease protein |
| phnC | 298 | phosphonate ABC transporter ATP-binding protein |
| phnE | 299 | phosphonate ABC transporter permease protein |
| pstA | 1772 | phosphate ABC transporter ATP binding protein |
| pstB | 1772 | phosphate ABC transporter ATP binding protein |
| pstC | 1773 | phosphate ABC transporter permease protein |
| pstD | 1774 | phosphate ABC transporter permease protein |
| pstE | 1775 | phosphate ABC transporter substrate binding protein |
| pstF | 1776 | phosphate ABC transporter substrate binding protein |
| yafB | 52 | sulfate transporter |
| Carbohydrates, organic alcohols and acids | ||
| glpF1 | 248 | glycerol uptake facilitator |
| glpF2 | 1270 | glycerol uptake facilitator |
| glpT | 549 | glycerol-3-phosphatase transporter |
| gntP | 2266 | gluconate permease |
| lacS | 2063 | lactose permease |
| maeP | 1205 | malate permease |
| malE | 1740 | maltose ABC transporter substrate binding protein |
| malF | 1741 | maltose ABC transporter permease protein |
| malG | 1742 | maltose ABC transporter permease protein |
| mleP | 924 | malate transporter |
| msmK | 428 | multiple sugar ABC transporter ATP-binding protein |
| rbsA | 1685 | ribose ABC transporter ATP binding protein |
| rbsB | 1683 | ribose ABC transporter substrate binding protein |
| rbsC | 1684 | ribose ABC transporter permease protein |
| rbsD | 1686 | ribose ABC transporter permease protein |
| rgpC | 204 | polysaccharide ABC transporter permease protein |
| rgpD | 205 | polysaccharide ABC transporter ATP-binding protein |
| tagG | 939 | teichoic acid ABC transporter permease protein |
| tagH | 938 | teichoic acid ABC transporter ATP binding protein |
| uxuT | 1676 | Na-galactoside symporter |
| xylT | 1542 | D-xylose proton-symporter |
| xynT | 1546 | xyloside transporter |
| yngE | 1366 | sugar ABC transporter ATP binding protein |
| yngF | 1368 | sugar ABC transporter permease protein |
| yngG | 1369 | sugar ABC transporter permease protein |
| ypbD | 1515 | sugar transport symporter |
| ypcG | 1528 | sugar ABC transporter substrate binding protein |
| ypcH | 1529 | sugar ABC transporter permease protein |
| ypdA | 1530 | sugar ABC transporter substrate binding protein |
| yqgE | 1668 | transporter |
| yvdD | 2134 | transporter |
| Cations | ||
| amtB | 1636 | ammonium transporter |
| cadA | 97 | cadmium efflux ATPase |
| copA | 847 | copper/potassium-transporting ATPase |
| copB | 872 | copper-potassium transporting ATPase B |
| feoA | 192 | ferrous ion transport protein A |
| feoB | 191 | ferrous ion transport protein B |
| fhuB | 328 | ferrichrome ABC transporter permease protein |
| fhuC | 327 | ferrichrome ABC transporter ATB binding protein |
| fhuD | 330 | ferrichrome ABC transporter substrate binding protein |
| fhuG | 329 | ferrichrome ABC transporter permease protein |
| kupA | 610 | potassium uptake protein |
| kupB | 613 | potassium uptake protein |
| mgtA | 1287 | cation-transporting P-ATPase |
| mtsA | 1350 | manganese ABC transporter substrate binding protein |
| mtsB | 1351 | manganese ABC transporter ATP binding protein |
| mtsC | 1351 | manganese ABC transporter permease protein |
| nah | 1994 | Na+/H+ antiporter |
| pacL | 677 | cation-transporting ATPase |
| ydaE | 308 | cation transporter |
| yddA | 332 | transporter |
| ydiF | 388 | Na+/H+ antiporter |
| yfgQ | 570 | cation-transporting ATPase |
| ygfE | 657 | divalent cation transport-related protein |
| yieF | 846 | mercuric reductase |
| yjdJ | 937 | potassium channel protein |
| yliI | 1190 | cation-transporting ATPase |
| yndG | 1337 | metal ABC transporter substrate binding protein |
| yoaB | 1404 | cation-transporting ATPase |
| yogJ | 1468 | cation transporter |
| ypbB | 1512 | cationic transporter |
| yqeI | 1650 | cation transport protein |
| yqgG | 1664 | cation transport ATPase |
| ysdE | 1838 | cation transporter |
| ytjB | 1990 | manganese transporter |
| yuiA | 2081 | metal transporting ATPase |
| yxdC | 2336 | cation-transporting ATPase |
| zitP | 2183 | zinc ABC transporter permease protein |
| zitQ | 2183 | zinc ABC transporter ATP binding protein |
| zitS | 2184 | zinc ABC transporter substrate binding protein |
| Nucleosides, purines and pyrimidines | ||
| pbuX | 1161 | xanthine permease |
| pnuC1 | 856 | nicotinamide mononucleotide transporter |
| pnuC2 | 901 | nicotinamide mononucleotide transporter |
| pyrP | 1647 | uracil permease |
| PTS system | ||
| celB | 178 | cellobiose-specific PTS system IIC component |
| fruA | 986 | fructose-specific PTS system enzyme IIBC component |
| mtlA | 29 | mannitol-specific PTS system IIBC component |
| mtlF | 33 | mannitol-specific PTS system IIA component |
| ptbA | 1492 | beta-glucoside-specific PTS system IIABC component |
| ptcA | 419 | cellobiose-specific PTS system IIA component |
| ptcB | 419 | cellobiose-specific PTS system IIB component |
| ptcC | 421 | cellobiose-specific PTS system IIC component |
| ptnAB | 1763 | mannose-specific PTS system component IIAB |
| ptnC | 1764 | mannose-specific PTS system component IIC |
| ptnD | 1765 | mannose-specific PTS system component IID |
| ptsH | 120 | phosphocarrier protein Hpr |
| ptsI | 122 | phosphoenolpyruvate-protein phosphotransferase |
| ptsK | 605 | Hpr(Ser) kinase |
| yedF | 439 | beta-glucoside-specific PTS system IIABC component |
| yidB | 832 | cellobiose-specific PTS system IIC component |
| yleD | 1146 | sucrose-specific PTS system IIBC component |
| yleE | 1147 | beta-glucoside-specific PTS system IIABC component |
| Multidrug resistance | ||
| blt | 126 | multidrug efflux transporter |
| cydC | 711 | cytochrome D ABC transporter ATP binding and permease protein |
| cydD | 713 | cytochrome D ABC transporter ATP binding and permease protein |
| lcnC | 84 | lactococcin A ABC transporter ATP binding and permease protein |
| lcnD | 85 | lactococcin A ABC transporter permease protein |
| lmrA | 717 | multidrug resistance ABC transporter ATP binding and permease protein |
| lmrP | 2242 | integral membrane protein LmrP |
| napC | 306 | multidrug-efflux transporter |
| pmrA | 661 | multidrug resistance efflux pump |
| pmrB | 130 | multidrug resistance efflux pump |
| ybfD | 158 | transporter |
| ycdH | 236 | transporter |
| ydiC | 385 | efflux pump antibiotic resistance protein |
| yfjF | 599 | membrane-bound transport protein |
| yjdE | 933 | multidrug resistance protein |
| yniG | 1386 | drug-export protein |
| ypfE | 1557 | transport protein |
| ypiB | 1582 | transporter |
| yqiA | 1682 | multidrug transporter |
| yweA | 2240 | membrane protein |
| yxbD | 2319 | transporter |
| OTHER CATEGORIES | ||
| Adaptations and atypical conditions | ||
| arsC | 1412 | arsenate reductase |
| clpB | 1568 | ClpB protein |
| clpC | 631 | ATP-dependent protease ATP-binding subunit |
| clpE | 552 | ATP-dependent protease ATP-binding subunit |
| clpP | 673 | ATP-dependent Clp protease proteolytic subunit |
| clpX | 1164 | ATP dependent Clp protease |
| cpo | 835 | non-heme chloride peroxidase |
| cspD | 517 | cold shock protein D |
| cspE | 173 | cold shock protein E |
| cstA | 414 | carbon starvation protein |
| ctsR | 630 | transctiptional regulator CtsR |
| dinF | 172 | damage-inducible protein DinF |
| dinP | 2105 | DNA-damage-inducible protein P |
| dpsA | 2102 | non-heme iron-binding ferritin |
| grpE | 978 | stress responce protein GrpE |
| hrcA | 977 | heat-inducible transcription repressor HrcA |
| osmC | 69 | osmotically inducible protein |
| phoL | 1094 | phosphate starvation inducible protein |
| tpx | 302 | thiol peroxidase |
| ybjA | 193 | reductase |
| yjbE | 915 | general stress protein GSP13 |
| Drug and analog sensitivity | ||
| bacA | 2276 | undecaprenol kinase |
| bar | 1837 | acyltransferase |
| pacA | 1150 | penicillin acylase |
| pacB | 1904 | penicillin acylase |
| ymdC | 1234 | kanamycin kinase |
| Phage related functions and prophages | ||
| pi101 | 448 | prophage pi1 protein 01, integrase |
| pi102 | 449 | prophage pi1 protein 02 |
| pi103 | 450 | prophage pi1 protein 03, transcriptional regulator |
| pi104 | 450 | prophage pi1 protein 04, transcriptional regulator |
| pi105 | 451 | prophage pi1 protein 05 |
| pi106 | 451 | prophage pi1 protein 06 |
| pi107 | 451 | prophage pi1 protein 07 |
| pi108 | 452 | prophage pi1 protein 08 |
| pi109 | 452 | prophage pi1 protein 09 |
| pi110 | 453 | prophage pi1 protein 10, transcriptional regulator |
| pi111 | 453 | prophage pi1 protein 11, recombinase |
| pi112 | 454 | prophage pi1 protein 12 |
| pi113 | 455 | prophage pi1 protein 13, replisome organiser |
| pi114 | 456 | prophage pi1 protein 14, DNA replication protein |
| pi115 | 457 | prophage pi1 protein 15 |
| pi116 | 457 | prophage pi1 protein 16 |
| pi117 | 458 | prophage pi1 protein 17 |
| pi118 | 458 | prophage pi1 protein 18 |
| pi119 | 459 | prophage pi1 protein 19 |
| pi120 | 459 | prophage pi1 protein 16, deoxyuridine 5'-triphosphate nucleotidohydrolase |
| pi121 | 459 | prophage pi1 protein 21 |
| pi122 | 460 | prophage pi1 protein 22 |
| pi123 | 460 | prophage pi1 protein 23 |
| pi124 | 460 | prophage pi1 protein 24 |
| pi125 | 461 | prophage pi1 protein 25 |
| pi126 | 461 | prophage pi1 protein 26 |
| pi127 | 461 | prophage pi1 protein 27 |
| pi128 | 462 | prophage pi1 protein 28 |
| pi129 | 462 | prophage pi1 protein 29 |
| pi130 | 462 | prophage pi1 protein 30 |
| pi131 | 463 | prophage pi1 protein 31 |
| pi132 | 464 | prophage pi1 protein 32 |
| pi133 | 464 | prophage pi1 protein 33, terminase small subunit |
| pi134 | 465 | prophage pi1 protein 34, terminase large subunit |
| pi135 | 467 | prophage pi1 protein 35 |
| pi136 | 468 | prophage pi1 protein 36, prohead protease |
| pi137 | 469 | prophage pi1 protein 37, capsid protein |
| pi138 | 470 | prophage pi1 protein 38 |
| pi139 | 470 | prophage pi1 protein 39 |
| pi140 | 470 | prophage pi1 protein 40, tail component |
| pi141 | 471 | prophage pi1 protein 41, tail component |
| pi142 | 471 | prophage pi1 protein 42, small major structural protein |
| pi143 | 472 | prophage pi1 protein 43 |
| pi144 | 474 | prophage pi1 protein 44, tail component |
| pi145 | 477 | prophage pi1 protein 45, tail component |
| pi146 | 480 | prophage pi1 protein 46, tail component |
| pi147 | 482 | prophage pi1 protein 47 |
| pi148 | 482 | prophage pi1 protein 48, holin |
| pi149 | 483 | prophage pi1 protein 49, muramidase |
| pi201 | 1037 | prophage pi2 protein 01, integrase |
| pi202 | 1038 | prophage pi2 protein 02 |
| pi203 | 1039 | prophage pi2 protein 03 |
| pi204 | 1039 | prophage pi2 protein 04 hypothetical protein |
| pi205 | 1040 | prophage pi2 protein 05 |
| pi206 | 1040 | prophage pi2 protein 06 |
| pi207 | 1041 | prophage pi2 protein 07 |
| pi208 | 1041 | prophage pi2 protein 08 |
| pi209 | 1042 | prophage pi2 protein 09 |
| pi210 | 1042 | prophage pi2 protein 10 |
| pi211 | 1043 | prophage pi2 protein 11, topoisomerase |
| pi212 | 1043 | prophage pi2 protein 12, single strand binding protein |
| pi213 | 1044 | prophage pi2 protein 13, replisome organiser |
| pi214 | 1045 | prophage pi2 protein 14 |
| pi215 | 1045 | prophage pi2 protein 15 |
| pi216 | 1046 | prophage pi2 protein 16 |
| pi217 | 1046 | prophage pi2 protein 17 |
| pi218 | 1047 | prophage pi2 protein 18 |
| pi219 | 1048 | prophage pi2 protein 19 |
| pi220 | 1048 | prophage pi2 protein 20 hypothetical protein |
| pi221 | 1049 | prophage pi2 protein 21, deoxyuridine 5'-triphosphate nucleotidohydrolase |
| pi222 | 1049 | prophage pi2 protein 22 |
| pi223 | 1049 | prophage pi2 protein 23 |
| pi224 | 1050 | prophage pi2 protein 24 |
| pi225 | 1051 | prophage pi2 protein 25 |
| pi226 | 1051 | prophage pi2 protein 26 |
| pi227 | 1052 | prophage pi2 protein 27 |
| pi228 | 1052 | prophage pi2 protein 28 |
| pi229 | 1053 | prophage pi2 protein 29 |
| pi230 | 1054 | prophage pi2 protein 30, terminase |
| pi231 | 1055 | prophage pi2 protein 31 |
| pi232 | 1056 | prophage pi2 protein 32 |
| pi233 | 1057 | prophage pi2 protein 33, capsid protein |
| pi234 | 1058 | prophage pi2 protein 34 |
| pi235 | 1059 | prophage pi2 protein 35 |
| pi236 | 1059 | prophage pi2 protein 36 |
| pi237 | 1059 | prophage pi2 protein 37 |
| pi238 | 1060 | prophage pi2 protein 38 |
| pi239 | 1060 | prophage pi2 protein 39 |
| pi240 | 1061 | prophage pi2 protein 40 |
| pi241 | 1061 | prophage pi2 protein 41 |
| pi242 | 1062 | prophage pi2 protein 42 |
| pi243 | 1064 | prophage pi2 protein 43 |
| pi244 | 1065 | prophage pi2 protein 44 |
| pi245 | 1068 | prophage pi2 protein 45 |
| pi246 | 1069 | prophage pi2 protein 46 |
| pi247 | 1069 | prophage pi2 protein 47 |
| pi248 | 1070 | prophage pi2 protein 48 |
| pi249 | 1070 | prophage pi2 protein 49 |
| pi250 | 1070 | prophage pi2 protein 50 |
| pi251 | 1071 | prophage pi2 protein 51, holin |
| pi252 | 1071 | prophage pi2 protein 52, muramidase |
| pi301 | 1414 | prophage pi3 protein 01 |
| pi302 | 1415 | prophage pi3 protein 02 |
| pi303 | 1415 | prophage pi3 protein 03 |
| pi304 | 1416 | prophage pi3 protein 04 |
| pi305 | 1416 | prophage pi3 protein 05, muramidase |
| pi306 | 1417 | prophage pi3 protein 06, holin |
| pi307 | 1418 | prophage pi3 protein 07 |
| pi308 | 1419 | prophage pi3 protein 08 |
| pi309 | 1420 | prophage pi3 protein 09 |
| pi310 | 1421 | prophage pi3 protein 10 |
| pi311 | 1422 | prophage pi3 protein 11 |
| pi312 | 1424 | prophage pi3 protein 12 |
| pi313 | 1425 | prophage pi3 protein 13, tail component |
| pi314 | 1428 | prophage pi3 protein 14 |
| pi315 | 1431 | prophage pi3 protein 15 |
| pi316 | 1431 | prophage pi3 protein 16, tail component |
| pi317 | 1432 | prophage pi3 protein 17, major tail protein |
| pi318 | 1433 | prophage pi3 protein 18, tail component |
| pi319 | 1433 | prophage pi3 protein 19, tail component |
| pi320 | 1433 | prophage pi3 protein 20, head-tail joining protein |
| pi321 | 1434 | prophage pi3 protein 21 |
| pi322 | 1435 | prophage pi3 protein 22, major head protein precursor |
| pi323 | 1436 | prophage pi3 protein 23, ATP dependent Clp protease |
| pi324 | 1436 | prophage pi3 protein 24 |
| pi325 | 1437 | prophage pi3 protein 25, head-tail joining protein |
| pi326 | 1438 | prophage pi3 protein 26, terminase large subunit |
| pi327 | 1439 | prophage pi3 protein 27, terminase small subunit |
| pi328 | 1440 | prophage pi3 protein 28 |
| pi329 | 1440 | prophage pi3 protein 29 |
| pi330 | 1441 | prophage pi3 protein 30 |
| pi331 | 1441 | prophage pi3 protein 31 |
| pi332 | 1442 | prophage pi3 protein 32 |
| pi333 | 1443 | prophage pi3 protein 33 |
| pi334 | 1443 | prophage pi3 protein 34 |
| pi335 | 1443 | prophage pi3 protein 35, deoxyuridine 5'-triphosphate nucleotidohydrolase |
| pi336 | 1444 | prophage pi3 protein 36 |
| pi337 | 1444 | prophage pi3 protein 37 |
| pi338 | 1445 | prophage pi3 protein 38 |
| pi339 | 1445 | prophage pi3 protein 39 |
| pi340 | 1446 | prophage pi3 protein 40 |
| pi341 | 1446 | prophage pi3 protein 41 |
| pi342 | 1446 | prophage pi3 protein 42 |
| pi343 | 1447 | prophage pi3 protein 43 |
| pi344 | 1447 | prophage pi3 protein 44 |
| pi345 | 1447 | prophage pi3 protein 45 |
| pi346 | 1448 | prophage pi3 protein 46, DNA replication protein |
| pi347 | 1449 | prophage pi3 protein 47, replisome organiser |
| pi348 | 1450 | prophage pi3 protein 48, single strand binding helix destabilising protein |
| pi349 | 1450 | prophage pi3 protein 49 |
| pi350 | 1451 | prophage pi3 protein 50 |
| pi351 | 1451 | prophage pi3 protein 51 |
| pi352 | 1452 | prophage pi3 protein 52 |
| pi353 | 1452 | prophage pi3 protein 53 |
| pi354 | 1452 | prophage pi3 protein 54 |
| pi355 | 1453 | prophage pi3 protein 55, antirepressor |
| pi356 | 1453 | prophage pi3 protein 56, cro-like repressor |
| pi357 | 1454 | prophage pi3 protein 57, cI-like repressor |
| pi358 | 1455 | prophage pi3 protein 58 |
| pi359 | 1455 | prophage pi3 protein 59 |
| pi360 | 1456 | prophage pi3 protein 60, integrase |
| pip | 1720 | phage infection protein |
| ps101 | 36 | prophage ps1 protein 01, hypothetical regulator |
| ps102 | 36 | prophage ps1 protein 02 |
| ps103 | 37 | prophage ps1 protein 03, terminase subunit |
| ps104 | 37 | prophage ps1 protein 04 |
| ps105 | 38 | prophage ps1 protein 05, DNA primase |
| ps106 | 40 | prophage ps1 protein 06 |
| ps107 | 40 | prophage ps1 protein 07 |
| ps108 | 41 | prophage ps1 protein 08 |
| ps109 | 41 | prophage ps1 protein 09 |
| ps110 | 41 | prophage ps1 protein 10 |
| ps111 | 42 | prophage ps1 protein 11, transcriptional regulator |
| ps112 | 42 | prophage ps1 protein 12 |
| ps113 | 42 | prophage ps1 protein 13 |
| ps114 | 43 | prophage ps1 protein 14 |
| ps115 | 44 | prophage ps1 protein 15, transcriptional regulator |
| ps116 | 44 | prophage ps1 protein 16 |
| ps117 | 45 | prophage ps1 protein 17 |
| ps118 | 45 | prophage ps1 protein 18 |
| ps119 | 45 | prophage ps1 protein 19 |
| ps120 | 46 | prophage ps1 protein 20 |
| ps121 | 47 | prophage ps1 protein 21 |
| ps122 | 48 | prophage ps1 protein 22 |
| ps123 | 49 | prophage ps1 protein 23, integrase |
| ps201 | 503 | prophage ps2 protein 01, integrase |
| ps202 | 504 | prophage ps2 protein 02 |
| ps203 | 505 | prophage ps2 protein 03 |
| ps204 | 505 | prophage ps2 protein 04 |
| ps205 | 506 | prophage ps2 protein 05, transcriptional repressor |
| ps206 | 506 | prophage ps2 protein 06 |
| ps207 | 506 | prophage ps2 protein 07, excisionase |
| ps208 | 507 | prophage ps2 protein 08 |
| ps209 | 507 | prophage ps2 protein 09 |
| ps210 | 507 | prophage ps2 protein 10 |
| ps211 | 508 | prophage ps2 protein 11 |
| ps212 | 508 | prophage ps2 protein 12 |
| ps213 | 508 | prophage ps2 protein 13 |
| ps214 | 509 | prophage ps2 protein 14 |
| ps215 | 510 | prophage ps2 protein 15 |
| ps216 | 511 | prophage ps2 protein 16 |
| ps218 | 512 | prophage ps2 protein 18 |
| ps219 | 512 | prophage ps2 protein 19 |
| ps220 | 513 | prophage ps2 protein 20 |
| ps221 | 514 | prophage ps2 protein 21 |
| ps301 | 2014 | prophage ps3 protein 01 |
| ps302 | 2015 | prophage ps3 protein 02 |
| ps303 | 2015 | prophage ps3 protein 03 |
| ps304 | 2016 | prophage ps3 protein 04 |
| ps305 | 2016 | prophage ps3 protein 05 |
| ps306 | 2018 | prophage ps3 protein 06 |
| ps307 | 2019 | prophage ps3 protein 07 |
| ps308 | 2019 | prophage ps3 protein 08 |
| ps309 | 2019 | prophage ps3 protein 09 |
| ps310 | 2020 | prophage ps3 protein 10 |
| ps311 | 2021 | prophage ps3 protein 11 |
| ps312 | 2022 | prophage ps3 protein 12 |
| ps313 | 2023 | prophage ps3 protein 13 |
| ps314 | 2023 | prophage ps3 protein 14, transcriptional regulator |
| ps315 | 2024 | prophage ps3 protein 15 |
| ps316 | 2025 | prophage ps3 protein 16, integrase |
| Transposon related functions | ||
| tra1077A | 53 | transposase of IS1077A |
| tra1077B | 140 | transposase of IS1077B |
| tra1077C | 375 | transposase of IS1077C |
| tra1077D | 628 | transposase of IS1077D |
| tra1077E | 838 | transposase of IS1077E |
| tra1077F | 2156 | transposase of IS1077F |
| tra1077G | 2217 | transposase of IS1077G |
| tra904A | 54 | transposase of IS904A |
| tra904B | 138 | transposase of IS904B |
| tra904C | 40 | transposase of IS904C |
| tra904D | 374 | transposase of IS904D |
| tra904E | 627 | transposase of IS904E |
| tra904F | 836 | transposase of IS904F |
| tra904G | 839 | transposase of IS904G |
| tra904H | 2155 | transposase of IS904H |
| tra904I | 2215 | transposase of IS904I |
| tra905 | 1225 | transposase of IS905 |
| tra981A | 92 | transposase of IS981A |
| tra981B | 93 | transposase of IS981B |
| tra981C | 651 | transposase of IS981C |
| tra981D | 729 | transposase of IS981D |
| tra981E | 1217 | transposase of IS981E |
| tra981F | 1222 | transposase of IS981F |
| tra981G | 1276 | transposase of IS981G |
| tra981H | 1586 | transposase of IS981H |
| tra981I | 1748 | transposase of IS981I |
| tra981J | 2103 | transposase of IS981J |
| tra982 | 640 | transposase of IS982 |
| tra983A | 682 | transposase of IS983A |
| tra983B | 707 | transposase of IS983B |
| tra983C | 958 | transposase of IS983C |
| tra983D | 1338 | transposase of IS983D |
| tra983E | 1396 | transposase of IS983E |
| tra983F | 1556 | transposase of IS983F |
| tra983G | 1755 | transposase of IS983G |
| tra983H | 1954 | transposase of IS983H |
| tra983I | 1978 | transposase of IS983I |
| tra983J | 2012 | transposase of IS983J |
| tra983K | 2017 | transposase of IS983K |
| tra983L | 2084 | transposase of IS983L |
| tra983M | 2148 | transposase of IS983M |
| tra983N | 2203 | transposase of IS983N |
| tra983O | 2268 | transposase of IS983O |
| yafG | 53 | hypothetical protein |
| yafI | 55 | hypothetical protein |
| yajE | 92 | transposase |
| yajG | 94 | transposase |
| ybdK | 138 | hypothetical protein |
| ybdL | 139 | hypothetical protein |
| ybeG | 141 | hypothetical protein |
| ydhD | 373 | hypothetical protein |
| ydhE | 375 | hypothetical protein |
| yfjB | 593 | transposon-related protein |
| ygcD | 628 | hypothetical protein |
| ygcE | 629 | hypothetical protein |
| ygfF | 651 | transposase |
| yhcJ | 729 | transposase |
| yidF | 837 | hypothetical protein |
| yidG | 838 | hypothetical protein |
| yidH | 839 | hypothetical protein |
| ymbA | 1212 | integrase |
| ymbI | 1217 | transposase |
| ymcD | 1222 | transposase |
| ymfD | 1259 | integrase-recombinase |
| ymhB | 1276 | transposase |
| ypiI | 1587 | transposase |
| yrdA | 1748 | transposase |
| yuiI | 2104 | transposase |
| yvfC | 2157 | hypothetical protein |
| yvfD | 2156 | hypothetical protein |
| yvjF | 2216 | hypothetical protein |
| ywbC | 2217 | hypothetical protein |
| Other | ||
| crtK | 574 | carotenoid biosynthetic protein CrtK |
| yebB | 412 | carotenoid biosynthetic protein |
[i] #Gene symbols, coordinates in kb, and definitions are shown. Bold italic symbols correspond to gene functions experimentally confirmed in L. lactis.