Table 1.

Contents of Interspersed Repeats

G+C content Sine Line Line1 LTR elements DNA transposon-like elements Unclassified elements Total interspersed repeats
mouse
Dlk1-Gtl2 49.4%9.6%3.2%3.0%1.6%0.3%0.0%14.7%
lgf2-H19 51.4%1.8%0.9%0.7%2.0%0.1%0.0%4.8%
genome46–50%14.4%n.d.3.4%9.9%n.d.n.d28.9%
50–54%16.5%n.d.1.4%3.6%n.d.n.d.20.3%
human
DLK1-GTL2 51.4%13.5%12.6%11.6%7.4%2.3%0.0%35.8%
lGF2-H19 59.5%3.6%4.4%3.4%3.1%1.2%0.0%12.3%
autosomes50–54%25.5%[ii] n.d.4.8%4.7%1.8%n.d.41%
>54%20.1%[ii] n.d.3.0%2.9%1.2%n.d.31%
X chromosome50–54%24.9%[ii] n.d.6.1%2.7%1.1%n.d.38%
>54%14.8%[ii] n.d.5.3%2.8%1.0%n.d.26%
sheep
Dlk1-Gtl2 53.7%5.5%12.0%20.5%20.5%20.5%20.5%20.5%

[i] Shown are summaries for the interspersed repeats that were identified using RepeatMasker( http://ftp.genome.washington.edu/index.html ) for the analyzed sequences. The average values for human autosomal and X chromosome linked sequences and mouse genome-wide sequences were taken from Smit (1999). Separate values for mouse autosomes and X chromosome were not available. Because the content of interspersed repeats is related to the G+C content, the values are given for sequences that show G+C contents similar to the imprinted regions analyzed here.

[ii] Sum of the values for Alu and Mir elements; n.d., not defined.