A 2-tuple Hash Table for S1, S2, and S3
| w | E(w) | Positions | ||||||
| AA | 0 | (2, 19) | ||||||
| AC | 1 | (1, 9) | (2, 5) | (2, 11) | ||||
| AG | 2 | (1, 15) | (2, 35) | |||||
| AT | 3 | (2, 13) | (3, 3) | |||||
| CA | 4 | (2, 3) | (2, 9) | (2, 21) | (2, 27) | (2, 33) | (3, 21) | (3, 23) |
| CC | 5 | (1, 21) | (2, 31) | (3, 5) | (3, 7) | |||
| CG | 6 | (1, 5) | ||||||
| CT | 7 | (1, 23) | (2, 39) | (2, 43) | (3, 13) | (3, 15) | (3, 17) | |
| GA | 8 | (1, 3) | (1, 17) | (2, 15) | (2, 25) | |||
| GC | 9 | |||||||
| GG | 10 | (1, 25) | (1, 31) | (2, 17) | (2, 29) | (3, 1) | ||
| GT | 11 | (1, 1) | (1, 27) | (1, 29) | (2, 1) | (2, 37) | (3, 19) | |
| TA | 12 | (3, 25) | ||||||
| TC | 13 | (1, 7) | (1, 11) | (1, 19) | (2, 23) | (2, 41) | (3, 11) | |
| TG | 14 | (1, 13) | (2, 7) | (3, 9) | ||||
| TT | 15 | |||||||