Automated Data Collection Run Times for Each Tool and Total
| Tool | Sec/tool | Responses | Total sec |
| GENSCAN | 1800 | 65 | 117000 |
| BLASTX nr | 8880 | 65 | 577200 |
| BLASTNnt | 960 | 65 | 62400 |
| BLASTNEST | 360 | 65 | 23400 |
| FASTAdmEST | 120 | 65 | 7800 |
| FASTAdmcDNA | 8 | 65 | 520 |
| REPORTS | 120 | 65 | 7800 |
| Subtotal | 455 | 822120 | |
| BLASTXnr | 400 | 841 | 336400 |
| Subtotal | 4205 | 336400 | |
| BLASTN Adh | 8 | 551 | 4408 |
| TBLASTNcDNA | 4 | 551 | 2204 |
| BLASTPCDS | 1 | 551 | 551 |
| FASTAXnr | 480 | 551 | 264480 |
| REPORTS | 60 | 551 | 33060 |
| Subtotal | 2755 | 304703 | |
| TBLASTN Adh | 2 | 184 | 368 |
| BLASTPCDS | 1 | 184 | 184 |
| FASTAPCDS | 1 | 184 | 184 |
| REPORTS | 60 | 184 | 11040 |
| Subtotal | 736 | 11776 | |
| TBLASTNcDNA | 4 | 53 | 106 |
| TBLASTXcDNA | 12 | 53 | 636 |
| BLASTNcDNA | 4 | 53 | 106 |
| BLASTN Adh | 8 | 53 | 212 |
| BLASTPCDS | 1 | 53 | 53 |
| FASTAPnr | 480 | 53 | 25440 |
| FASTA 26 genomes | 8 | 1378 | 11024 |
| REPORTS | 60 | 53 | 3180 |
| Subtotal | 1537 | 40757 | |
| Total | 5483 | 1515756 |
[i] Run times and totals were determined using Ultrasparc 336-mHz CPUs writing to disk via an UltraSCSI fast-and-wide connection.