Markup | Genome Research

Table 1.

Accuracy of Gene Prediction Tools in the Set of Single Gene Sequences (h178)

Program		No.		Nucleotide		Exon
				Nucleotide		Sn		Sp		$\frac{Sn + Sp}{2}$		ME		WE
						Sn		Sp		$\frac{Sn + Sp}{2}$		ME		WE
Sn	Sp	CC
GenScan	177	0.93	0.90	0.90	0.78	0.75	0.76	0.08	0.10
Blastx default	175	0.91	0.79	0.82	0.04	0.04	0.04	0.12	0.05
Blastx topcomboN	174	0.97	0.80	0.86	0.04	0.04	0.04	0.08	0.05
Blastx 2 stages	175	0.90	0.92	0.90	0.10	0.12	0.11	0.19	0.02
GeneWise	177	0.98	0.98	0.97	0.88	0.91	0.89	0.06	0.02
Procrustes	177	0.93	0.95	0.93	0.76	0.82	0.79	0.11	0.04