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Table 1.

Summary information on the RPRP genomes and their annotations

Stock accession^a	RPRP gene model prefix	Genetic stock varname	Country origin	K15 subpops	K15 common	K5 groups	Gene count
IRGC 117425	OsARC_	ARC 10497::IRGC 12485-1	India	cB	cBasmati	aro	36,442
IRGC 117264	OsAzu_	Azucena	Philippines	GJ-trop1	tropA	Tropjap	36,626
IRGC 132278	OsCMeo_	CHAO MEO::IRGC 80273-1	Lao PDR	GJ-subtrp	subtrop	Tropjap	36,999
IRGC 132424	OsGoSa_	GOBOL SAIL (BALAM)::IRGC 26624-2	Bangladesh	XI-2A	ind2A	indica	36,237
IRGC 117268	OsIR64_	IR 64	Philippines	XI-1B1	ind1B1	indica	36,102
IRGC 128077	OsKeNa_	KETAN NANGKA::IRGC 19961-2	Indonesia	GJ-trop2	tropB	Tropjap	36,612
IRGC 127518	OsKYG_	KHAO YAI GUANG::IRGC 65972-1	Thailand	XI-3B1	ind3B1	indica	36,476
IRGC 125619	OsLaMu_	LARHA MUGAD::IRGC 52339-1	India	XI-2B	ind2B	indica	36,316
IRGC 127564	OsLima_	LIMA::IRGC 81487-1	Indonesia	XI-3A	ind3A	indica	37,044
IRGC 125827	OsLiXu_	LIU XU::IRGC 109232-1	China	XI-3B2	ind3B2	indica	36,378
IRGC 125827	OsMH63_	Minghui 63	China	XI-adm	ind-admx	indica	36,147
IRGC 117534	OsN22_	N22::IRGC 19379-1	India	cA1	cAus1 (Assam)	aus	36,319
IRGC 127652	OsNaBo_	NATEL BORO::IRGC 34749-1	Bangladesh	CA2	cAus2 (Bengal)	aus	36,196
IRGC 117274	Os (RAP-DB); Loc_Os (MSU); Gramene annotations OsNip_	Nipponbare (IRGSP1.0)	Japan	GJ-temp	temp	Tempjap	62,225^b
IRGC 127742	OsPr106_	PR 106::IRGC 53418-1	India	XI-1B2	ind1B2	indica	36,436
IRGC 117280	OsZS97_	Zhen Shan 97	China	XI-1A	ind1A	indica	35,686

[i] ^aStock accession or closest OryzaSNP_accession.

[ii] ^bBreakdown by source prior to merging: RAP-DB = 35,694, MSU = 55,801 (including possible transposable elements), OsNip = 37,007.