Markup | Genome Research

Table 1.

The details of the benchmark data sets

Data sets	Pairing	Cells	TFs	Genes	GRN	Genome	GEO
A549	Paired	3260	113	1245	15,066	hg19	GSE117089
GM12878	Paired	2444	171	1456	42,174	hg19	GSE140203
K562	Paired	4846	480	1955	103,432	hg19	GSE140203
3T3	Paired	2161	22	870	3671	mm10	GSE140203
A549-rep	scATAC	8596	113	1245	–	hg19	GSE211617
GM12878-rep	scATAC	9865	171	1456	–	hg19	GSE140203
hESC	scRNA	758	26	1157	5022	hg19	GSE75748
hESC	scATAC	4683	26	1157	5022	hg19	GSE192858
mHSC	scRNA	421	45	558	10,009	mm9	GSE98664
mHSC	scATAC	190	45	558	10,009	mm9	GSE107651