Table 2.

Hi-C contact statistics confirming phasing correctness of the Pst104E genome assembly

Types of Hi-C contacts (MAPQ ≥ 20)Counts
Total Hi-C links1,126,566
Within-haplotype links1,117,107 (99.2%)
 cis-chromosome
  Haplotype A479,583 (42.6%)
  Haplotype B467,937 (41.5%)
 trans-chromosome
  Haplotype A85,667 (7.6%)
  Haplotype B83,920 (7.5%)
Cross-haplotype links9459 (0.8%)