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Table 1.

Lake Malawi haplochromine cichlid genome assemblies

Species/sample	Short name	Sex	Sequencing technology	Assembler	No. of contigs/scaffolds	Contig/scaffold N50 (Mbp)	Total size (Gbp)	Sequencing depth	BUSCO score
Astatotilapia calliptera	astCal	?	PacBio CLR + Illumina	Falcon	738 (248)	4.4 (38.7)	0.88	80.72	97.2
Maylandia zebra	mayZeb	Male	PacBio + Illumina	Falcon	2331 (1690)	1.4 (32.7)	0.96	154.12	98.4
Tropheops sp. “mauve”	troMau	Male	PacBio CLR	Falcon	271	8.4	0.91	137.72	98.4
Aulonocara stuartgranti	aulStu	Male	PacBio CLR	Falcon	1027	2.1	0.89	86.31	98.3
Otopharynx argyrosoma	otoArg	Male	ONT	Shasta	2861	2.5	0.88	24.44	93.6
Copadichromis chrysonotus	copChr	Male	ONT	Shasta	6225	0.6	0.86	19.43	92.5
Rhamphcchromis sp. “chilingali”	rhaChi	Male	PacBio CLR	Falcon	437	4.4	0.90	94.37	98.4
Rhamphcchromis sp. “chilingali”	rhaChi2	Female	ONT	Shasta	3239	1.2	0.85	42.13	93.9

[i] astCal and mayZeb are previously published chromosome-level assemblies from Ensembl. Values in parentheses for these two indicate properties calculated for scaffolds, in addition to the contig-level statistics like for the other assemblies.