Table 4.

Genome assembly and annotation details for species analyzed in this study

SpeciesNameGenBank accessionDownload linkAnnotation release date
Homo sapiensGRCh38.p14GCA_000001405.29https://ftp.ncbi.nlm.nih.gov/genomes/all/annotation_releases/9606/GCF_000001405.40-RS_2023_03/March 21, 2023
Homo sapiensT2T-CHM13v2.0GCA_009914755.4https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/914/755/GCF_009914755.1_T2T-CHM13v2.0/August 27, 2024
Pan troglodytesmPanTro3-v1.1GCA_028858775.1https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/858/775/GCF_028858775.1_NHGRI_mPanTro3-v1.1-hic.freeze_pri/April 11, 2023
Mus musculusGRCm39GCA_000001635.9https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/635/GCF_000001635.27_GRCm39/February 8, 2024
Mus musculusNOD_SCIDGCA_031763685.1https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/763/685/GCA_031763685.1_NOD_SCID/NA
Rattus norvegicusmRatBN7.2GCA_015227675.2https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/227/675/GCF_015227675.2_mRatBN7.2/June 12, 2023
Apis melliferaAmel_HAv3.1GCA_003254395.2https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/254/395/GCF_003254395.2_Amel_HAv3.1/September 30, 2022
Apis melliferaASM1932182v1GCA_019321825.1https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/321/825/GCA_019321825.1_ASM1932182v1/NA
Arabidopsis thalianaTAIR10.1GCA_000001735.2https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/735/GCF_000001735.4_TAIR10.1/June 16, 2023
Arabidopsis thalianaASM2311539v1GCA_023115395.1https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/115/395/GCA_023115395.1_ASM2311539v1/NA
Oryza sativaIRGSP-1.0GCA_001433935.1https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/433/935/GCF_001433935.1_IRGSP-1.0/June 6, 2023
Oryza sativaASM3414082v1GCA_034140825.1https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/034/140/825/GCF_034140825.1_ASM3414082v1/July 11, 2024
Drosophila melanogasterRelease 6 plus ISO1 MTGCA_000001215.4https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/215/GCF_000001215.4_Release_6_plus_ISO1_MT/December 27, 2023
Drosophila erectaDereRS2GCA_003286155.2https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/286/155/GCF_003286155.1_DereRS2/June 24, 2019

[i] Note that for each species, the table includes the GenBank accession number, assembly name, FTP sites for assembly and annotation downloads, and annotation release dates.