Table 1.

Summary of the detected rearrangements

FamiliesCopy number profileHGVSDuplicated genes
1,2DUP-TRIP-DUPchr4:g.113954280_qterdelins[

chr4:g.113912749_113915113inv;

chr4:g.111100841_qter]
ELOVL6, ENPEP, PITX2, FAM241A, AP1AR, TIFA, ALPK1, NEUROG2, ZGRF1, LARP7, hsa-miR-297, ANK2
3aDUP-NML-DUPchrX:g.29570408_qterdelins[

chrX:g.33038509_33426916inv;

chrX:g.29020059_qter]
IL1RAPL1, DMD
4DUP-NML-DUPchr14:g.21879481_qterdelins[

chr14:g.21501001_21502976;

chr14:g.21849620_qter]
RNASE13, SUPT16H, CHD8
5TRIP-QUINT-TRIPchr16:g.3899656_qterdelins[

chr16:g.3689781_3762460inv;

chr16:g.3688503_3899656;

chr16:g.3689781_3762460inv;

chr16:g.3688503_qter]
DNASE1, TRAP1, CREBBP

[i] Genes associated with autism in bold. (HGVS) Human Genome Variation Society.

[ii] aCGR architecture not conclusively resolved.