Execution time (in minutes) of MaSk-LMM, Regenie, BOLT-LMM, and FaST-LMM when applied to the simulated data sets
| Data set | MaSk-LMM | Regenie | BOLT-LMM | FaST-LMM |
|---|---|---|---|---|
| D1 | 1.0 | 30.53 (30.53) | 22.00 (22) | 11.00 (11) |
| D2 | 15.15 | 309.32 (20.42) | 219.63 (14.50) | n/aa (∞) |
| D3 | 88.45 | 911.37 (10.30) | 1674.53 (18.93) | n/aa,b (∞) |
| CAD | 91.5 | 137.5 (1.5) | n/ac (∞) | n/aa,b (∞) |
| HYP | 1063.2 | 1796.7 (1.69) | n/ab (∞) | n/aa,b (∞) |
[i] Speedup, in parentheses, achieved by MaSk-LMM compared to the other methods.
[ii] aIndicates no convergence after 50 h.
[iii] bIndicates inability to allocate space for computation.
[iv] cIndicates program-specific errors raised.