Markup | Genome Research

Table 1.

Statistics of Cast1–Cast9 arrays detected in the Tcas5.2 and TcasONT genome assemblies

	Tcas5.2					TcasONT					Total length difference (bp)
	Array number	Total length (bp)	Array mean (bp)	Maximal array length (bp)	Genome abundance (%)	Array number	Total length (bp)	Array mean (bp)	Maximal array length (bp)	Genome abundance (%)	Total length difference (bp)
Cast1	71	206,931	2915	61,324	0.140	106	865,816	8168	112,523	0.452	658,885
Cast2	121	178,456	1475	17,682	0.121	77	267,482	3474	54,320	0.140	89,026
Cast2′	29	117,847	4064	21,938	0.080	258	2,928,418	11,350	66,157	1.529	2,810,571
Cast3	173	220,599	1275	4173	0.149	172	246,560	1433	10,679	0.129	25,961
Cast4	100	147,755	1478	9103	0.100	88	334,031	3796	56,181	0.174	186,276
Cast5	66	258,820	3922	12,025	0.175	148	2,897,522	19,578	85,403	1.512	2,638,702
Cast6	17	166,879	9816	43,796	0.113	23	715,260	31,098	77,335	0.373	548,381
Cast7	86	82,188	956	3729	0.056	273	332,266	1217	6028	0.173	250,078
Cast8	32	38,553	1205	4280	0.026	24	51,621	2151	6463	0.027	13,068
Cast9	117	145,832	1246	4575	0.099	98	139,574	1424	5958	0.073	–6,258
Total	812	1,563,860			1.059	1267	8,778,550			4.582	7,214,690