Markup | Genome Research

Table 1.

NTE50 and LTE50 values of each library

Library	D. melanogaster		O. sativa		C. cornix		D. rerio		Z. mays		H. sapiens
Library	NTE50	LTE50	NTE50	LTE50	NTE50	LTE50	NTE50	LTE50	NTE50	LTE50	NTE50	LTE50
RM2	3167	2188	25,075	1296	9699	769	582,490	378	207,065	2564	1,155,606	327
RM2 + MCHelper	2577	3007	19,235	1824	6953	1077	406,526	515	132,536	5046	676,997	464
EDTA	2342	3925	28,674	1584	3405	2164	623,608	340	382,400	1565	957,177	321
EDTA + MCHelper	3259	1762	24,031	1411	4453	1371	448,658	468	129,175	5328	680,093	464
REPET	2426	3514	19,675	1754	7108	979	559,160	337	138,840	4897	–	–
REPET + MCHelper	2201	4082	18,144	2032	7150	1051	492,326	364	131,590	5074	–	–
Reference	2570	3158	15,900	2279	13,088	569	457,644	439	120,514	5453	653,254	412

[i] The NTE50 is calculated as the number of the largest copies needed to annotate 50% of the mobilome, while the LTE50 is defined as the length of the shortest TE annotation that annotates 50% of the mobilome (Jamilloux et al. 2017).