The number and percentage of discrepancies within various genomic compartments, per haplotype
| Haplotype | CDS (6%) | Noncoding exon (5%) | UTR (4%) | Intergenic/intronic (85%) | Total |
|---|---|---|---|---|---|
| PGF | 2 (0.35%) | 16 (2.83%) | 5 (0.88%) | 542 (95.93%) | 565 |
| COX | 0 (0%) | 5 (0.12%) | 2 (0.05%) | 4049 (99.83%) | 4056 |
| EAS_P_1 | 1 (0.44%) | 1 (0.44%) | 4 (1.75%) | 223 (97.38%) | 229 |
| EAS_P_2 | 0 (0%) | 1 (0.39%) | 2 (0.78%) | 252 (98.82%) | 255 |
| EUR_P_1 | 11 (1.07%) | 30 (2.91%) | 16 (1.55%) | 973 (94.47%) | 1030 |
| EUR_P_2 | 4 (0.34%) | 12 (1.02%) | 25 (2.13%) | 1132 (96.5%) | 1173 |
[i] The relative size of each compartment within the MHC is listed next to the name.