Table 4.

Read partitioning statistics

SampleHaplotype-partitioned readsHomozygous readsUnknown reads
PGF + COX150,713 (85.15%)25,042 (14.15%)1235 (0.7%)
EAS-P199,652 (79.49%)48,423 (19.28%)3092 (1.23%)
EUR-P259,482 (51.98%)236,086 (47.29%)3628 (0.73%)
AFA172,561 (77.65%)42,875 (19.29%)6789 (3.06%)

[i] Number of edited reads that are either in haplotype-specific regions that could be partitioned (haplotype partitioned reads), homozygous regions of the MHC (homozygous reads), or haplotype-specific regions that could not be partitioned (unknown reads). Percentages relative to the total edited reads (Table 2) are in parentheses.