A DIAG $D(\mathrm{R},{\stackrel{\sim }{\mathcal{A}}}_N)=\left(V,E\right)$ constructed on a set $\left\{1,2,\dots ,12\right\}$ of segments, and a set $\mathcal{A}\left(\mathrm{R}\right)\cup \mathcal{H}\left({\stackrel{\sim }{\mathcal{A}}}_N\right)$ of adjacencies. The set $\mathcal{A}\left(\mathrm{R}\right)$ corresponds to reference adjacencies in a diploid reference R shown in Figure 6B, and the set ${\stackrel{\sim }{\mathcal{A}}}_N=\left\{\left\{3^h,7^h\right\},\left\{2^h,9^h\right\},\left\{4^t,8^t\right\},\left\{4^h,4^h\right\},\left\{5^t,8^h\right\},\left\{3^t,{10}^t\right\},\left\{6^h,{11}^t\right\}\right\}$ represents unlabeled novel adjacencies that were measured from a derived genome G shown in Figure 6C. Squares indicate telomere vertices $\mathcal{T}\left(G\right)=\mathcal{T}\left(\mathrm{R}\right)\subseteq V$, and circles are non-telomere vertices. Solid edges correspond to segment edges in E_S, with dark blue/green edges corresponding to segments labeled A, and light blue/green edges corresponding to segments labeled B. Black-dashed edges are reference adjacency edges E_R, and red-dotted edges are novel adjacency edges E_N.