Table 1.

Potential α2/Mcm1–Binding sites in the Yeast Genome

ORF Gene[i] bp Sequence[ii] (TGTANWWWWCCNNNNNNGGWWWWNTACA)
mis = 0
YDR461W MFA1 204TGTAA TTACCCAAAAAGGAAATTTACA
YFL026W STE2 201TGTAAATTTCCTAATTGGGTAA GTACA
YGL032C AGA2 271TGTAA TTCCGAATACGGTAA TTACA
YIL015W BAR1 237TGTAA TTACCGTAAAAGGAAA TTACA
YKL209C STE6 184TGTAA TTACCTAATAGGGAAATTTACA
YNL145W MFA2 223TGTAT TTACCTATTCGGGAAATTTACA
mis = 1
DPS1 [iii] TGTAA TTACTGTATTGGGAAATTTACA
YJL170C ASG7 205TGTAAATTTCCCGATGCGGTAA TTACG
YJL169W166
YKL188C PXA2 259TGTAA TTAACGCCGAAGGAAT ATACA
YMR219W ESC1 29TGTAA ATTCACCAAGGGGTTAAGTACA
YMR218C191
mis = 2
DPS2[iii] TGTAA TTACTTAAATAGGAAGTTTACA
YBL108W533TGTAG ATACCGTCCTTGGATA GAGCA
YEL066W HPA3 103 CGTATATTTCCCAATCCGGTTA TTAAA
YFR007W55TGAAG TAACCTTGTTAGGTTAATTTCA
YGL075C MMC1 344TGTCATATACCCGTGAAGGCAT TTACA
YGL187C COX4 324TGTATTTTTCAATAAGAGGATTATAACA
YJL062W LAS21 162TATAGATATGCTTATACGGATATATACA
YJL063C MRPL8 620
YJR137C ECM17 611TGTACAATACCATCAATGGCTT CTAAA
YJR138W645
YLR432W405TGTTCATTTCTAACTCTGGTTAATTACA
YLR431C422
YNL053W MSG5 249TGTAC TTTCCAAAAAAGGAAA ATGTA
YNL298W CLA4 349 GGTAT TTTCCCTTTCCGGAAATATAGA
tS(AGA)J tS(AGA)J 469TGTTTAAATTCTTCTGGGGTAT ATACA
YAR020C PAU7 3′TGTAG ATACCGTCTACGGATA GAGCA
YPR009W3′TGTAA TTTCCTCCTATGTAAA ATATA
YBR259W3′TGTAG TAAATTATTATGGAATAGTACA
YIR034C LYS1 intTGTAT ATACTTTAAATGTAAA CTACA
YIR019C MUC1 intTGTAA TTTCACCACCTGGTTTTGTACT
YIL131C FKH1 intTGTAAATATCCGCTAATGAAATACTACC
YJR091C JSN1 intTGGAGATT CCTGTGTTGGAATAGTATA
YAL029C MYO4 intTCTAAAATACCAATAAAGGAAA AGACA
YGRWTy3-1 Ty3 intTGTACAATTCCTGAAAAAGTTT GTATA
YMR146C TIF34 int AGTAG TTACCGCATGGGGAAA ATTCA
YML043C RRN11 intTGTAC AATGCAAAAGTGGAAT TTCCA
YIL031W SMT4 intTGTAT TTTCAACAATCGGTGATCTACA
YNL250W RAD50 intTGAAATTTTCCAAGCGATGAAATTTACA
YGL083W SCY1 intTGTTCATAACCGCGCAAGCTTT GTACA
YNL192W CHS1 intTGTAT ATTCCTTTTGTCATTT TT ACA
YNL191WintTGTAG AAACTTCACCAGGAGA ATACA
YNL041CintTGAAT TATCCCTCAGGGCTAA GTACA
YDL074CintTGTAGTTTTTCACACTTGGATT CTAGA
YDR541CintTGTAA AAACCACACTGGGATC GTCCA
YGL186CintTGTATTTATCACTTGATGAAAT GTACA
YLR084C RAX2 int GGTAATATTCCATTCTTGGTTT CTATA
YNL047Cint AGTAC ATTCCACTAATGGTAT TGACA
YNL078WintTGGGT TTACCACTTCAGGTTATATACA
YDR206W EBS1 intTGTACTTTTGCCGAAAAGGATT ATCCA
YIR010Wint AGGAT ATTCCTGAAGAGGATTTTTACA
YER037WintTGGAT TATCCGTGAAAGGTTTAATAAA
YPL164CintTGTAG TTTTCGAAATGGGATAAATCCA
YJL223C PAU1 intTGTAG ATACCGTCCTTGGATA GAGCA
YEL049W PAU2 intTGCTC TATCCAAGGACGGTAT CTACA
YGL261CintTGTAG ATACCGTCCTTGGATA GAGCA
YGR294W MGA1 intTGCTC TATCCAAGGACGGTAT CTACA
YIL176CintTGTAG ATACCGTCCTTGGATA GAGCA
YAL068CintTGTAG ATACCGTCCTTGGATA GAGCA
YBR301WintTGCTC TATCCAAGGTCGGTAT CTACA
YHL046CintTGTAG ATACCGTCCTTGGATA GAGCA
YKL224CintTGTAG ATACCGTCCTTGGATA GAGCA
YDR542WintTGCTC TATCCAAGGTCGGTAT CTACA

[i] Blank entries indicate that a gene name has not been assigned to the ORF.

[ii] Mismatches with the consensus sequence are underlined. Blank entries indicate a site that is within the promoter region of two divergently transcribed genes. The site is shown on the line above.

[iii] The DPS1 and DPS2 sites are α2–Mcm1 sites located on the left arm of Chromosome III and are involved in mating-type switching but do not appear to regulate a specific ORF (Szeto et al. 1997).