Table 1.

Cer Element Characteristics

C. elegans retrotransposable element Genomic clone Chromosome Inserted element length (bp) Integrase location relative to RT LTR length/% identity LTR end dinucleotides Direct flanking repeat
Cer1 f4432/par3III 8,8653′491/100tg/ctatca/atca
Cer1-1 y43d4IV 8,8653′491/99.6tg/ctagtg/agtg
Cer2-0 r03d7II 9,8463′645/99.2tg/ctattg/attg
Cer3-0 f58h7IV 8,7203′424/100tg/ctataa/ataa
Cer4-0 t23e7/f15g10X 5,0813′164/99.4tg/taatttc/atttc
Cer5-0 t03f1I 5,0823′211/100ag/cagttag/cttat
Cer5-1 k02a2/y91d1aII 5,0083′61/96.7at/ttagtat/agtgc
Cer6 e03a3/t02c12III 5,1113′218/100tg/cactaaa/ctaaa
Cer6-1 y102a5cV∼7,2303′∼300 <95%not identifiednot identified
Cer7 zc132V10,0523′327/99.7tg/tacccag/cccag
Cer8 zk228/y51a2c/zk262V19,4963′300–600/5′  has large  insertion  or 3′ has  deletiontg/cagcccg/gcccg
Cer9 y43f4aIII13,5883′517/99.8tg/caacttc/acttc
Cer10 f07c7/y91b8a/c35b8X12,4513′648/99.7tg/caaagtt/aagtt
Cer10-1 t23b12Vnot identified3′not identifiednot identifiednot identified
Cer11 t14g12X 8,000  (coding)3′not identifiednot identifiednot identified
Cer12 f55c9/f21d9V12,0673′537/99.6tg/cagaaac/gaaac