Table 1.

Advanced Microbial Genome Projects and Their Status[i]

Species and taxonomic position Genome size (Mb) Status Presenter (institution)
Bacteria
Escherichia coli(Proteobacteria)4.64complete; released, submitted to GenBank with preliminary annotation; detailed annotation in progressFred Blattner (University of Wisconsin, Madison)
Helicobacter pylori(Proteobacteria)1.67complete; annotation in progressJean-Francois Tomb (TIGR)
Treponema pallidum(Spirochaetales)1.05nearly complete (several gaps remaining)Claire Fraser (TIGR)
Borrelia burgdorferi(Spirochaetales)1.3in progress, completion expected in 1997Claire Fraser (TIGR)
Ureaplasma urealyticum(Gram-positive bacteria, Mycoplasmas)0.76nearly completeElliot J. Lefkowitz (University of Alabama, Birmingham)
Streptococcus pneumoniae (low G+C Gram-positive bacteria)2.05nearly complete (several gaps remaining)Brian A. Dougherty, TIGR
Neisseria gonorrhoeae (Proteobacteria)2.05>95% complete; contig sequences available through WWWBruce A. Roe (University of Oklahoma, Oklahoma City)
Streptococcus pyogenes (low G+C Gram-positive bacteria)1.92>95% complete; contig sequences available through WWWBruce A. Roe
Mycobacterium tuberculosis (Gram-positive bacteria, Actinomycetes)4.4>75% completeRobert D. Fleischmann (TIGR); Bart Barrell (The Sanger Center, Hinxton, Cambridge, UK)
Rickettsia prowazekii(Proteobacteria)1.1>80% complete; detailed analysis in progressSiv G.E. Andersson (Uppsala University, Sweden)
Aquifex aeolicus (oxygen-reducing bacteria)1.55nearly complete (2 short gaps remaining)Ronald V. Swanson (Recombinant Biocatalysis Inc., Sharon Hill, PA)
Archaea
Methanobacterium thermoautotrophicum (Euryarchaeaota, Methanobacteriales)1.7complete; annotation in progressDouglas R. Smith (Genome Therapeutics Corporation, Waltham, MA)
Archaeoglobus fulvidus (Euryarchaeaota, Archaeaoglobales)2.2nearly complete (one short gap remaining); annotation in progressHans-Peter Klenk (TIGR)
Pyrobaculum aerophilum (Crenarchaeota, Thermoproteales)2.2nearly complete; annotation in progressSorel Fitz-Gibbon (University of California, Los Angeles)
Pyrococcus furiosus(Euryarchaeaota, Thermococcales)2.1in progress; complete genomes covered by clonesRobert B. Weiss (University of Utah, Salt Lake City)
Sulfolobus solfataricus (Crenarchaeota, Sulfolobales)3>50% sequenced; completion expected by the end of 1997Christoph W. Sensen (Institute for Marine Biosciences, National Research Council of Canada, Halifax, Nova Scotia)

[i] Complete genomes released and published prior to the meeting are not included. Genome projects that are only in their early stages are not mentioned either.