Markup | Genome Research

Table 3.

Numbers of the predicted and annotated genes as well as individual CDSs (including all alternative CDSs)

Species	GeneMark-ETP		RefSeq annotation
Species	No. of protein-coding genes	No. of predicted genomic CDSs	No. of protein-coding genes	No. of annotated genomic CDSs
C. elegans	18,820	19,806	19,969	28,544
A. thaliana	26,449	27,708	27,445	40,827
D. melanogaster	12,850	14,138	13,951	22,395
S. lycopersicum	24,420	26,341	25,158	31,911
D. rerio	28,608	31,961	25,610	42,929
G. gallus	17,275	21,433	17,279	38,534
M. musculus	23,956	27,686	22,405	58,318

[i] Note that the genomic CDSs and the corresponding transcript CDSs are supposed to be identical in sequence. The “order excluded” reference databases were used by GeneMark-ETP (see section “Data sets”).