Details on each of the assemblies used in this study
| Name | Version | Region | Lineage name | Breeding | Length | Scaffold N50 | AT-richness | Genes | BUSCO score | Technology | Level | BioSample | Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Okinawa | OKI2018_I69_1.0 | Okinawa, Ryūkyū archipelago | Okinawa | Laboratory | 64,281,565 | 17,092,476 | 59% | 17,291 | 64% | Nanopore + Illumina + HiC | Chromosomal | SAMEA7282646 | Bliznina et al. 2021 |
| Kume | KUM-M3-7f | Kume, Ryūkyū archipelago | Okinawa | Wild | 64,653,574 | 2,969,719 | 59% | 16,852 | 66% | Nanopore | Scaffold | SAMEA111279290 | This paper |
| Osaka | OSKA2016v1.9 | Honshū, Japan inland sea | Osaka | Laboratory | 56,625,162 | 15,521,227 | 58% | 15,720 | 63% | PacBio + Illumina | Chromosomal | SAMD00227923 | Wang et al. 2020a; this paper |
| Aomori | AOM-5-5f | Honshū, Japan, northeast Pacific coast | Osaka | Wild | 56,753,784 | 6,419,763 | 59% | 15,224 | 65% | Nanopore | Scaffold | SAMEA111279288 | This paper |
| Barcelona | Bar2_p4 | Spain, Mediterranean sea coast | Barcelona | Laboratory | 55,793,437 | 13,545,857 | 60% | 14,272 | 64% | Nanopore + Illumina + HiC | Chromosomal | SAMEA111279286 | This paper |
| Bergen | OdB3 | Norway, north Atlantic coast | Barcelona | Laboratory | 70,471,451 | 395,387 | 57% | 17,113 | 60% | Sanger | Scaffold | SAMEA2272014 | Denoeud et al. 2010 |
[i] (Name) Name of the genome reflecting provenance; (version) character string uniquely identifying the used version of the assembly file; (region) where the animal or the founders of its laboratory line was isolated; (breeding) wild isolate or laboratory culture line; (length) assembly sequence length in base pairs; (scaffold N50) half of the genome is covered by scaffolds of at least this length; (AT richness) a percentage of A's and T's in the sequence; (genes) number of genes in the annotation used in this study; (BUSCO score) detected percentage of the metazoan set of Benchmark Unique Single-Copy Orthologs; (technology) sequencing and assembly technologies used; (level) chromosomal or scaffold; (BioSample) identifier in the DDBJ, EBI, and NCBI databases; and (reference) peer-reviewed manuscripts describing the already published genome sequences.