Table 4.

Structural and sequence annotations arising from comparison of GRCr8 and mRatBN7.2 assemblies using SyRI software

Variation_typeCountLength of GRCr8 (bp)Length of mRatBN7.2 (bp)
Structural annotations
 Syntenic regions1152,643,106,5572,615,590,561
 Inversions273,442,4662,884,883
 Translocations793,577,8123,580,878
 Duplications (GRCr8)791,581,927
 Duplications (mRatBN7.2)21155,272
 Not aligned (GRCr8)295160,909,795
 Not aligned (mRatBN7.2)17111,946,199
Sequence annotations
 SNPs175,070175,070175,070
 Insertions196,3241,527,995
 Deletions87,2744,603,406
 Copy gains692,600
 Copy losses8957,763
 Highly diverged1,98145,639,98721,500,783
 Tandem repeats412,52412,857